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adding reminder of tests
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Signed-off-by: vsoch <vsochat@stanford.edu>
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vsoch committed Sep 11, 2020
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8 changes: 4 additions & 4 deletions README.md
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Expand Up @@ -243,10 +243,10 @@ putting them in a file to stream (5.90 hours).
|bulk_create_sims|7.28 hours| 42250000 similarity scores | creating similarity scores with bulk_create for each row of genes |
|copyfrom_create_genes|0.056 seconds|6500 genes | creating genes with one copyfrom list|
|copyfrom_create_sims|6.681 hours | 42250000 similarity scores| using copyfrom with StringIO (per row of genes)|
|copyfromfile_create_diagonal_sims|4.66 seconds|6500| StringIO and copy from for matrix diagonal|
|copyfromfile_write_genes_file|5.90 hours|42243500| writing all other gene sims to a text file|
|copyfromfile_create_genes|0.056 seconds|6500| creating genes with one copyfrom list|
|copyfromfile_create_sims|23.29 minutes|42250000|creating similiarties with copyfrom directly from file|
|copyfromfile_create_diagonal_sims|4.66 seconds|6500 diagonal similarities| StringIO and copy from for matrix diagonal|
|copyfromfile_write_genes_file|5.90 hours|42243500 gene similarites (not including diagonals)| writing all other gene sims to a text file|
|copyfromfile_create_genes|0.056 seconds|6500 genes| creating genes with one copyfrom list|
|copyfromfile_create_sims|23.29 minutes|42250000 total gene similarities|creating similiarties with copyfrom directly from file|

Indeed, the operation to write the final scores is speedy! If we can find a fast way to
produce the large file, this seems like a possible solution.
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