Files for "Autofluorescence imaging permits label free cell type assignment in unmodified airway and reveals the dynamic formation of airway secretory cell associated antigen passages (SAPs)."
Appendix 1 - Image flattening matlab script - Matlab script used to flatten tracheal surface for analysis using SHG
ML models to classify cell types Appendix 2 - jupyter script for classification of cell types
X Training Data - data used for training machine learning algorithim (all characteristics)
Y training data - data used for training machine learning algorithim (all cell identities) - please refer to cell identity key
Cell Identity Key - Designation for each cell type
Costar insert for 60mm dishes - STL file for insert to mount inverted costar ALI to 60mm dish