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Simple overlap analysis #17

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lgeistlinger opened this issue Nov 1, 2019 · 1 comment
Closed

Simple overlap analysis #17

lgeistlinger opened this issue Nov 1, 2019 · 1 comment
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lgeistlinger commented Nov 1, 2019 •
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Vignette Section 6 (Overlap analysis) would benefit from some basic overlap functionality in the beginning of the section, to demonstrate eg how to carry over CNV type from summarized population ranges (CNVRs) to some query regions such as protein coding genes, ie something along the lines:

genes <- genes(TxDb)
cnvrs <- populationRanges(grl)

hits <- findOverlaps(genes, cnvrs, ignore.strand=TRUE)
cgenes <- genes[queryHits(hits)]
cgenes$type <- cnvrs$type[subjectHits(hits)]
cgenes
@lgeistlinger lgeistlinger mentioned this issue Nov 1, 2019
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@lgeistlinger lgeistlinger self-assigned this Nov 1, 2019
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closed via 93b1be4

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