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@LiNk-NY@schifferl - Firehose accesses all sorts of useful analyses that can be added to the MultiAssayExperiments, as pData, additional ExperimentList elements, or annotations to existing ExperimentList elements. See http://firebrowse.org/?cohort=ACC# - this also helps organizing the analyses by assay.
I've put all Firehose analyses on iRods in TCGA/Firehose_analyses, although it is just as easy to download them with the firehose_get command-line tool with the following command:
firehose_get analyses latest
We'll have to review these to see what would be practical to add, and how, but these seem like low-hanging fruit for high-value MultiAssayExperiment additions (including clustering for several assays across all cancer types...)
The text was updated successfully, but these errors were encountered:
@LiNk-NY @schifferl - Firehose accesses all sorts of useful analyses that can be added to the MultiAssayExperiments, as pData, additional ExperimentList elements, or annotations to existing ExperimentList elements. See http://firebrowse.org/?cohort=ACC# - this also helps organizing the analyses by assay.
I've put all Firehose analyses on iRods in TCGA/Firehose_analyses, although it is just as easy to download them with the firehose_get command-line tool with the following command:
firehose_get analyses latest
We'll have to review these to see what would be practical to add, and how, but these seem like low-hanging fruit for high-value MultiAssayExperiment additions (including clustering for several assays across all cancer types...)
The text was updated successfully, but these errors were encountered: