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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(TurnoverDist)
export(annotateRAXMLTree)
export(assignTaxaByRank)
export(batchDownload)
export(beta1minus1)
export(combineTaxaAssign)
export(combineTriMatrix)
export(combineTwoDF)
export(convertType)
export(corrEnterotypeToGroup)
export(countCharOccurrences)
export(createTaxaTableMEGAN)
export(createTaxaTableRDP)
export(ctreeClassification)
export(deg2rad)
export(diversityTable)
export(doRDA)
export(enterotypePipeline)
export(findDuplicates)
export(firstN)
export(freqUniqueValue)
export(gcd)
export(gcd.hf)
export(gcd.slc)
export(gcd.vif)
export(geodesicDist.hf)
export(geodesicDist.slc)
export(getClusters)
export(getCountsSums)
export(getDataCluster)
export(getDissimilarity)
export(getDissimilarityList)
export(getDiverRare)
export(getFirstNInString)
export(getJSD)
export(getMethodLines)
export(getMultiDiverRare)
export(getPhylorareDF)
export(getPlotPrior)
export(getPlotPrior.JostDiver)
export(getPlotPrior.PhyloAlpha)
export(getPlural)
export(getRelativeAbundance)
export(getSubsamplesForDiverRare)
export(getTaxaMap)
export(getTriMatrix)
export(ggDiverRare)
export(groupsTaxaMembers)
export(gsubDF)
export(installAllPackages)
export(lassoClassification)
export(mantelComparison)
export(matchCMEnv)
export(mergeBy)
export(mergeCMTaxa)
export(mergeListOfDF)
export(mergePlotPriorListOfDF)
export(mkDir)
export(mostAbundantRows)
export(mvRowsToLast)
export(nmdsTriMatrix)
export(noise.removal)
export(normalize)
export(parseTSeqSet)
export(parseTaxaSet)
export(pasteDF)
export(phylo.alpha)
export(phylo.beta.dist)
export(phylo.mntd)
export(phylo.mpd)
export(phylo.unifrac.dist)
export(plotClusterAbundence)
export(plotCombinedTriMatrix)
export(plotCorrelations)
export(plotEnterotypes)
export(plotOptClusters)
export(plotPDBeta)
export(plotPrioritisation)
export(plotPrioritisation.NeatMap)
export(plotPrioritisation.Phyloseq)
export(plotProcrustes)
export(plotRDA)
export(plotTaxonomy)
export(prepTaxonomy)
export(preprocessCM)
export(preprocessEnv)
export(prettyNumbers)
export(printResult)
export(printXTable)
export(printXTable.RDA)
export(procrustesComparison)
export(readCodeCoverage)
export(readCommunityMatrix)
export(readFile)
export(readFileLineByLine)
export(readMCMCLog)
export(readTaxaTable)
export(renameFastaID)
export(renameTips)
export(rmDuplicateSeq)
export(rmMinAbundance)
export(seqSet2Fasta)
export(simpleCap)
export(spilt.df)
export(splitPath)
export(sublistByPairs)
export(subsetCM)
export(subsetSequences)
export(subsetTaxaTable)
export(substrBetween)
export(substrLast)
export(substrLastSplit)
export(sumColumns)
export(summReadsOTUsPipeline)
export(summaryCM)
export(summaryCM.Vector)
export(summaryCMPerSample)
export(summaryDiversity)
export(summaryOTUs)
export(summaryRank)
export(summaryTaxaAssign)
export(summaryTaxaGroup)
export(transposeDF)
export(trimSpace)
export(trimStartEndSpace)
export(writeCommunityMatrix)
export(writeTable)
import(reutils)
import(xml2)