IonFlow for Galaxy

Galaxy tool for processing and analysis of ionomics data , based on the modification of R package IonFlow.

Installation

• Install Galaxy under Linux.

• Use git to clone this tool

  git clone https://github.com/wanchanglin/ionflow.git

• Add this tool's location into Galaxy' tool config file: ~/Galaxy/config/tool_conf.xml. For example, one simplified tool_conf.xml looks like:

  <?xml version='1.0' encoding='utf-8'?>
  <toolbox monitor="true">
    
    <section id="getext" name="Get Data">
      <tool file="data_source/upload.xml" />
    </section>
    
    <section id="MyTools" name="My Tools">
      <tool file="/path/to/ionflow/ionflow.xml" />
    </section>
  
  </toolbox>

• Test data are in test-data.

• This tool is in the Galaxy Tool Shed: https://toolshed.g2.bx.psu.edu/view/metaboflow_cam/ionflow/3b461dc9568b. Follow the instruction in Installing Tools into Galaxy to install.

Authors, contributors & contacts

• Wanchang Lin (w.lin@imperial.ac.uk), Imperial College London
• Jacopo Iacovacci (j.iacovacci@imperial.ac.uk), Imperial College London
• Robert Glen (r.glen@imperial.ac.uk), Imperial College London
• Julian Griffin (julian.griffin@imperial.ac.uk), Imperial College London