Error when use rawhic input

[EddieLv]

My command is:
h1d one CI {sample}.cis10kb.hic ${res_h1d} chr19
-p {sample}_CI --datatype rawhic --msi fithic2 --gt {ppn}
The error message is:
Start dump matrix from hic file
Could not read hic file: Index 0 out of bounds for length 0
rm: cannot delete 'pluscol.chr194c9fa7d7.temp': no such file or directory
rm: cannot delete '././MatrixTemp0.5919967965865072/50000/observed.KR.chr19.txt': no such file or directory
Finish dump
Calculating 1D metrics for one sample
File does not exist, please check your file path

My .hic file is create through juicer_tools pre without normalization.

[EddieLv]

I cannot find the parameter to attach the version of my juicer tools.
And meanwhile, I found the error is caused by makeMatrixIntra.sh, it did look like the error of juicer dump.

[wangjk321]

Thank you for your feadback. The reason of this bug is:
.hic file made by newer Juicer pre is incompatible with older Juicer_tools dump.

I will update the code soon to support customized juicer_tools. BTW, current version in makeMatrixIntra.sh is Juicer_tools v1.11.04

[wangjk321]

If you know how to modify the python code, Just modify line 25 in makeMatrixIntra.sh
from
juicertool="java -Xms512m -Xmx20480m -jar $juicer"
to
juicertool="java -Xms512m -Xmx20480m -jar $your_correct_version_of_juicertools"

[EddieLv]

Thanks for your reply! The bug is solved!