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Errow when used rawhic input: "File does not exist, please check your file path" #5
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As for "--gt ./carmeli.length" The path to this file is correct, I've also tried absolute paths still not working. |
Please refer to this issue #1. I think the problem is your chromosome name is "Chr29" not "chr29" |
Well, I'm trying to use the "MatrixTemp0.05099345739986205/observed.KR.chrChr29.matrix.gz" that I just generated as an input file. It works. It seems that I need to convert the .hic file output by juicer to “matrix” format before continuing to run the other analyses。 |
Please check this. That's why the output name is strange, like "chrChr29" |
Yes, It is "Chr29" not "chr29". Thank you ! |
Hi,I have a similar problem when using
|
Hi !
My command is:
h1d call TAD ./carmeli.30.hic 25000 Chr29 -o test --datatype rawhic --gt ./carmeli.length
The error message is:
Start dump matrix from hic file
Finish dump
File does not exist, please check your file path
I saw a similar error at "#2", but I found a folder called ‘MatrixTemp0.05099345739986205’ created after running the command line.
It generates the file "observed.KR.chrChr29.matrix.gz", which means "Juicer_tools dump" is working.
When I calculated the PC1 value, my command is "h1d one PC1 ./carmeli.30.hic 50000 Chr29 -o test --datatype rawhic --gt ./carmeli.length -p ./carmeli.geneDensity.txt"
I encountered a similar error report:
Start dump matrix from hic file
Finish dump
Calculating 1D metrics for one sample
File does not exist, please check your file path
My h1d version is 0.1.29;
My Linux system is CentOS Stream release 8
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