TaxNorm is the R package for a novel feature-wise normalization method for microbiome data based on zero-inflated negative binomial model. This method assumes that the effects of sequencing depth vary for each taxon on their mean and incorporates a rational link of zero probability and taxon dispersion as a function of sequencing depth to better capture the microbiome data nature.
Current stable release:
install.packages("TaxaNorm")Build from GitHub:
if (!require(remotes)) install.packages("remotes")
remotes::install_github("wangziyue57/TaxaNorm",
dependencies = TRUE,
build_vignettes = TRUE)