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AndreaGuarracino committed Sep 8, 2023
1 parent df6a415 commit 67ab187
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/interface/parse_args.hpp
Original file line number Diff line number Diff line change
Expand Up @@ -111,7 +111,7 @@ void parse_args(int argc,
{'G', "wflign-params"});
args::ValueFlag<float> wflign_max_mash_dist(alignment_opts, "N", "maximum mash distance to perform the alignment in a wflambda segment [default: adaptive with respect to the estimated identity]", {'b', "max-mash-dist"});
args::ValueFlag<int> wflign_min_wavefront_length(alignment_opts, "N", "min wavefront length for heuristic WFlign [default: 1024]", {'j', "wflign-min-wf-len"});
args::ValueFlag<int> wflign_max_distance_threshold(alignment_opts, "N", "max distance threshold for heuristic WFlign [default: 2048/(estimated_identity^2)]", {'q', "wflign-max-disttance"});
args::ValueFlag<int> wflign_max_distance_threshold(alignment_opts, "N", "max distance threshold for heuristic WFlign [default: 2048/(estimated_identity^2)]", {'q', "wflign-max-distance"});

// patching parameter
args::ValueFlag<std::string> wflign_max_len_major(alignment_opts, "N", "maximum length to patch in the major axis [default: 512*segment-length]", {'C', "max-patch-major"});
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