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subset.c
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subset.c
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/*
* R : A Computer Language for Statistical Data Analysis
* Copyright (C) 1995, 1996 Robert Gentleman and Ross Ihaka
* Copyright (C) 1997-2014 The R Core Team
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, a copy is available at
* http://www.r-project.org/Licenses/
*
*
* Vector and List Subsetting
*
* There are three kinds of subscripting [, [[, and $.
* We have three different functions to compute these.
*
*
* Note on Matrix Subscripts
*
* The special [ subscripting where dim(x) == ncol(subscript matrix)
* is handled inside VectorSubset. The subscript matrix is turned
* into a subscript vector of the appropriate size and then
* VectorSubset continues. This provides coherence especially
* regarding attributes etc. (it would be quicker to handle this case
* separately, but then we would have more to keep in step.
*/
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#include <Defn.h>
#include <Internal.h>
/* JMC convinced MM that this was not a good idea: */
#undef _S4_subsettable
static R_INLINE SEXP VECTOR_ELT_FIX_NAMED(SEXP y, R_xlen_t i) {
/* if RHS (container or element) has NAMED > 0 set NAMED = 2.
Duplicating might be safer/more consistent (fix bug reported by
Radford Neal; similar to PR15098) */
SEXP val = VECTOR_ELT(y, i);
if ((NAMED(y) || NAMED(val)))
if (NAMED(val) < 2)
SET_NAMED(val, 2);
return val;
}
/* ExtractSubset does the transfer of elements from "x" to "result"
according to the integer/real subscripts given in "indx". */
static SEXP ExtractSubset(SEXP x, SEXP result, SEXP indx, SEXP call)
{
R_xlen_t i, ii, n, nx;
int mode, mi;
SEXP tmp, tmp2;
mode = TYPEOF(x);
mi = TYPEOF(indx);
n = XLENGTH(indx);
nx = xlength(x);
tmp = result;
if (x == R_NilValue)
return x;
for (i = 0; i < n; i++) {
switch(mi) {
case REALSXP:
if(!R_FINITE(REAL(indx)[i])) ii = NA_INTEGER;
else ii = (R_xlen_t) (REAL(indx)[i] - 1);
break;
default:
ii = INTEGER(indx)[i];
if (ii != NA_INTEGER) ii--;
}
switch (mode) {
/* NA_INTEGER < 0, so some of this is redundant */
case LGLSXP:
if (0 <= ii && ii < nx && ii != NA_INTEGER)
LOGICAL(result)[i] = LOGICAL(x)[ii];
else
LOGICAL(result)[i] = NA_INTEGER;
break;
case INTSXP:
if (0 <= ii && ii < nx && ii != NA_INTEGER)
INTEGER(result)[i] = INTEGER(x)[ii];
else
INTEGER(result)[i] = NA_INTEGER;
break;
case REALSXP:
if (0 <= ii && ii < nx && ii != NA_INTEGER)
REAL(result)[i] = REAL(x)[ii];
else
REAL(result)[i] = NA_REAL;
break;
case CPLXSXP:
if (0 <= ii && ii < nx && ii != NA_INTEGER) {
COMPLEX(result)[i] = COMPLEX(x)[ii];
} else {
COMPLEX(result)[i].r = NA_REAL;
COMPLEX(result)[i].i = NA_REAL;
}
break;
case STRSXP:
if (0 <= ii && ii < nx && ii != NA_INTEGER)
SET_STRING_ELT(result, i, STRING_ELT(x, ii));
else
SET_STRING_ELT(result, i, NA_STRING);
break;
case VECSXP:
case EXPRSXP:
if (0 <= ii && ii < nx && ii != NA_INTEGER)
SET_VECTOR_ELT(result, i, VECTOR_ELT_FIX_NAMED(x, ii));
else
SET_VECTOR_ELT(result, i, R_NilValue);
break;
case LISTSXP:
/* cannot happen: pairlists are coerced to lists */
case LANGSXP:
#ifdef LONG_VECTOR_SUPPORT
if (ii > R_SHORT_LEN_MAX)
error("invalid subscript for pairlist");
#endif
if (0 <= ii && ii < nx && ii != NA_INTEGER) {
tmp2 = nthcdr(x, (int) ii);
SETCAR(tmp, CAR(tmp2));
SET_TAG(tmp, TAG(tmp2));
}
else
SETCAR(tmp, R_NilValue);
tmp = CDR(tmp);
break;
case RAWSXP:
if (0 <= ii && ii < nx && ii != NA_INTEGER)
RAW(result)[i] = RAW(x)[ii];
else
RAW(result)[i] = (Rbyte) 0;
break;
default:
errorcall(call, R_MSG_ob_nonsub, type2char(mode));
}
}
return result;
}
/* This is for all cases with a single index, including 1D arrays and
matrix indexing of arrays */
static SEXP VectorSubset(SEXP x, SEXP s, SEXP call)
{
R_xlen_t n;
int mode;
R_xlen_t stretch = 1;
SEXP indx, result, attrib, nattrib;
if (s == R_MissingArg) return duplicate(x);
PROTECT(s);
attrib = getAttrib(x, R_DimSymbol);
/* Check to see if we have special matrix subscripting. */
/* If we do, make a real subscript vector and protect it. */
if (isMatrix(s) && isArray(x) && ncols(s) == length(attrib)) {
if (isString(s)) {
s = strmat2intmat(s, GetArrayDimnames(x), call);
UNPROTECT(1);
PROTECT(s);
}
if (isInteger(s) || isReal(s)) {
s = mat2indsub(attrib, s, call);
UNPROTECT(1);
PROTECT(s);
}
}
/* Convert to a vector of integer subscripts */
/* in the range 1:length(x). */
PROTECT(indx = makeSubscript(x, s, &stretch, call));
n = XLENGTH(indx);
/* Allocate the result. */
mode = TYPEOF(x);
/* No protection needed as ExtractSubset does not allocate */
result = allocVector(mode, n);
if (mode == VECSXP || mode == EXPRSXP)
/* we do not duplicate the values when extracting the subset,
so to be conservative mark the result as NAMED = 2 */
SET_NAMED(result, 2);
PROTECT(result = ExtractSubset(x, result, indx, call));
if (result != R_NilValue) {
if (
((attrib = getAttrib(x, R_NamesSymbol)) != R_NilValue) ||
( /* here we might have an array. Use row names if 1D */
isArray(x) && LENGTH(getAttrib(x, R_DimNamesSymbol)) == 1 &&
(attrib = getAttrib(x, R_DimNamesSymbol)) != R_NilValue &&
(attrib = GetRowNames(attrib)) != R_NilValue
)
) {
nattrib = allocVector(TYPEOF(attrib), n);
PROTECT(nattrib); /* seems unneeded */
nattrib = ExtractSubset(attrib, nattrib, indx, call);
setAttrib(result, R_NamesSymbol, nattrib);
UNPROTECT(1);
}
if ((attrib = getAttrib(x, R_SrcrefSymbol)) != R_NilValue &&
TYPEOF(attrib) == VECSXP) {
nattrib = allocVector(VECSXP, n);
PROTECT(nattrib); /* seems unneeded */
nattrib = ExtractSubset(attrib, nattrib, indx, call);
setAttrib(result, R_SrcrefSymbol, nattrib);
UNPROTECT(1);
}
/* FIXME: this is wrong, because the slots are gone, so result is an invalid object of the S4 class! JMC 3/3/09 */
#ifdef _S4_subsettable
if(IS_S4_OBJECT(x)) { /* e.g. contains = "list" */
setAttrib(result, R_ClassSymbol, getAttrib(x, R_ClassSymbol));
SET_S4_OBJECT(result);
}
#endif
}
UNPROTECT(3);
return result;
}
SEXP int_arraySubscript(int dim, SEXP s, SEXP dims, SEXP x, SEXP call);
static SEXP MatrixSubset(SEXP x, SEXP s, SEXP call, int drop)
{
SEXP attr, result, sr, sc, dim;
int nr, nc, nrs, ncs;
R_xlen_t i, j, ii, jj, ij, iijj;
nr = nrows(x);
nc = ncols(x);
/* Note that "s" is protected on entry. */
/* The following ensures that pointers remain protected. */
dim = getAttrib(x, R_DimSymbol);
sr = SETCAR(s, int_arraySubscript(0, CAR(s), dim, x, call));
sc = SETCADR(s, int_arraySubscript(1, CADR(s), dim, x, call));
nrs = LENGTH(sr);
ncs = LENGTH(sc);
/* Check this does not overflow: currently only possible on 32-bit */
if ((double)nrs * (double)ncs > R_XLEN_T_MAX)
error(_("dimensions would exceed maximum size of array"));
PROTECT(sr);
PROTECT(sc);
result = allocVector(TYPEOF(x), (R_xlen_t) nrs * (R_xlen_t) ncs);
PROTECT(result);
for (i = 0; i < nrs; i++) {
ii = INTEGER(sr)[i];
if (ii != NA_INTEGER) {
if (ii < 1 || ii > nr)
errorcall(call, R_MSG_subs_o_b);
ii--;
}
for (j = 0; j < ncs; j++) {
jj = INTEGER(sc)[j];
if (jj != NA_INTEGER) {
if (jj < 1 || jj > nc)
errorcall(call, R_MSG_subs_o_b);
jj--;
}
ij = i + j * nrs;
if (ii == NA_INTEGER || jj == NA_INTEGER) {
switch (TYPEOF(x)) {
case LGLSXP:
case INTSXP:
INTEGER(result)[ij] = NA_INTEGER;
break;
case REALSXP:
REAL(result)[ij] = NA_REAL;
break;
case CPLXSXP:
COMPLEX(result)[ij].r = NA_REAL;
COMPLEX(result)[ij].i = NA_REAL;
break;
case STRSXP:
SET_STRING_ELT(result, ij, NA_STRING);
break;
case VECSXP:
SET_VECTOR_ELT(result, ij, R_NilValue);
break;
case RAWSXP:
RAW(result)[ij] = (Rbyte) 0;
break;
default:
errorcall(call, _("matrix subscripting not handled for this type"));
break;
}
}
else {
iijj = ii + jj * nr;
switch (TYPEOF(x)) {
case LGLSXP:
LOGICAL(result)[ij] = LOGICAL(x)[iijj];
break;
case INTSXP:
INTEGER(result)[ij] = INTEGER(x)[iijj];
break;
case REALSXP:
REAL(result)[ij] = REAL(x)[iijj];
break;
case CPLXSXP:
COMPLEX(result)[ij] = COMPLEX(x)[iijj];
break;
case STRSXP:
SET_STRING_ELT(result, ij, STRING_ELT(x, iijj));
break;
case VECSXP:
SET_VECTOR_ELT(result, ij, VECTOR_ELT_FIX_NAMED(x, iijj));
break;
case RAWSXP:
RAW(result)[ij] = RAW(x)[iijj];
break;
default:
errorcall(call, _("matrix subscripting not handled for this type"));
break;
}
}
}
}
if(nrs >= 0 && ncs >= 0) {
PROTECT(attr = allocVector(INTSXP, 2));
INTEGER(attr)[0] = nrs;
INTEGER(attr)[1] = ncs;
setAttrib(result, R_DimSymbol, attr);
UNPROTECT(1);
}
/* The matrix elements have been transferred. Now we need to */
/* transfer the attributes. Most importantly, we need to subset */
/* the dimnames of the returned value. */
if (nrs >= 0 && ncs >= 0) {
SEXP dimnames, dimnamesnames, newdimnames;
dimnames = getAttrib(x, R_DimNamesSymbol);
PROTECT(dimnamesnames = getAttrib(dimnames, R_NamesSymbol));
if (!isNull(dimnames)) {
PROTECT(newdimnames = allocVector(VECSXP, 2));
if (TYPEOF(dimnames) == VECSXP) {
SET_VECTOR_ELT(newdimnames, 0,
ExtractSubset(VECTOR_ELT(dimnames, 0),
allocVector(STRSXP, nrs), sr, call));
SET_VECTOR_ELT(newdimnames, 1,
ExtractSubset(VECTOR_ELT(dimnames, 1),
allocVector(STRSXP, ncs), sc, call));
}
else {
SET_VECTOR_ELT(newdimnames, 0,
ExtractSubset(CAR(dimnames),
allocVector(STRSXP, nrs), sr, call));
SET_VECTOR_ELT(newdimnames, 1,
ExtractSubset(CADR(dimnames),
allocVector(STRSXP, ncs), sc, call));
}
setAttrib(newdimnames, R_NamesSymbol, dimnamesnames);
setAttrib(result, R_DimNamesSymbol, newdimnames);
UNPROTECT(1); /* newdimnames */
}
UNPROTECT(1); /* dimnamesnames */
}
/* Probably should not do this:
copyMostAttrib(x, result); */
if (drop)
DropDims(result);
UNPROTECT(3);
return result;
}
static SEXP ArraySubset(SEXP x, SEXP s, SEXP call, int drop)
{
int k, mode;
SEXP dimnames, dimnamesnames, p, q, r, result, xdims;
const void *vmaxsave = vmaxget();
mode = TYPEOF(x);
xdims = getAttrib(x, R_DimSymbol);
k = length(xdims);
/* k is now the number of dims */
int **subs = (int**)R_alloc(k, sizeof(int*));
int *indx = (int*)R_alloc(k, sizeof(int));
int *bound = (int*)R_alloc(k, sizeof(int));
R_xlen_t *offset = (R_xlen_t*)R_alloc(k, sizeof(R_xlen_t));
/* Construct a vector to contain the returned values. */
/* Store its extents. */
R_xlen_t n = 1;
r = s;
for (int i = 0; i < k; i++) {
SETCAR(r, int_arraySubscript(i, CAR(r), xdims, x, call));
bound[i] = LENGTH(CAR(r));
n *= bound[i];
r = CDR(r);
}
PROTECT(result = allocVector(mode, n));
r = s;
for (int i = 0; i < k; i++) {
indx[i] = 0;
subs[i] = INTEGER(CAR(r));
r = CDR(r);
}
offset[0] = 1;
for (int i = 1; i < k; i++)
offset[i] = offset[i - 1] * INTEGER(xdims)[i - 1];
/* Transfer the subset elements from "x" to "a". */
for (R_xlen_t i = 0; i < n; i++) {
R_xlen_t ii = 0;
for (int j = 0; j < k; j++) {
int jj = subs[j][indx[j]];
if (jj == NA_INTEGER) {
ii = NA_INTEGER;
goto assignLoop;
}
if (jj < 1 || jj > INTEGER(xdims)[j])
errorcall(call, R_MSG_subs_o_b);
ii += (jj - 1) * offset[j];
}
assignLoop:
switch (mode) {
case LGLSXP:
if (ii != NA_INTEGER)
LOGICAL(result)[i] = LOGICAL(x)[ii];
else
LOGICAL(result)[i] = NA_LOGICAL;
break;
case INTSXP:
if (ii != NA_INTEGER)
INTEGER(result)[i] = INTEGER(x)[ii];
else
INTEGER(result)[i] = NA_INTEGER;
break;
case REALSXP:
if (ii != NA_INTEGER)
REAL(result)[i] = REAL(x)[ii];
else
REAL(result)[i] = NA_REAL;
break;
case CPLXSXP:
if (ii != NA_INTEGER) {
COMPLEX(result)[i] = COMPLEX(x)[ii];
}
else {
COMPLEX(result)[i].r = NA_REAL;
COMPLEX(result)[i].i = NA_REAL;
}
break;
case STRSXP:
if (ii != NA_INTEGER)
SET_STRING_ELT(result, i, STRING_ELT(x, ii));
else
SET_STRING_ELT(result, i, NA_STRING);
break;
case VECSXP:
if (ii != NA_INTEGER)
SET_VECTOR_ELT(result, i, VECTOR_ELT_FIX_NAMED(x, ii));
else
SET_VECTOR_ELT(result, i, R_NilValue);
break;
case RAWSXP:
if (ii != NA_INTEGER)
RAW(result)[i] = RAW(x)[ii];
else
RAW(result)[i] = (Rbyte) 0;
break;
default:
errorcall(call, _("array subscripting not handled for this type"));
break;
}
if (n > 1) {
int j = 0;
while (++indx[j] >= bound[j]) {
indx[j] = 0;
j = (j + 1) % k;
}
}
}
PROTECT(xdims = allocVector(INTSXP, k));
for(int i = 0 ; i < k ; i++)
INTEGER(xdims)[i] = bound[i];
setAttrib(result, R_DimSymbol, xdims);
UNPROTECT(1); /* xdims */
/* The array elements have been transferred. */
/* Now we need to transfer the attributes. */
/* Most importantly, we need to subset the */
/* dimnames of the returned value. */
dimnames = getAttrib(x, R_DimNamesSymbol);
PROTECT(dimnamesnames = getAttrib(dimnames, R_NamesSymbol));
if (dimnames != R_NilValue) {
int j = 0;
PROTECT(xdims = allocVector(VECSXP, k));
if (TYPEOF(dimnames) == VECSXP) {
r = s;
for (int i = 0; i < k ; i++) {
if (bound[i] > 0) {
SET_VECTOR_ELT(xdims, j++,
ExtractSubset(VECTOR_ELT(dimnames, i),
allocVector(STRSXP, bound[i]),
CAR(r), call));
} else { /* 0-length dims have NULL dimnames */
SET_VECTOR_ELT(xdims, j++, R_NilValue);
}
r = CDR(r);
}
}
else {
p = dimnames;
q = xdims;
r = s;
for(int i = 0 ; i < k; i++) {
SETCAR(q, allocVector(STRSXP, bound[i]));
SETCAR(q, ExtractSubset(CAR(p), CAR(q), CAR(r), call));
p = CDR(p);
q = CDR(q);
r = CDR(r);
}
}
setAttrib(xdims, R_NamesSymbol, dimnamesnames);
setAttrib(result, R_DimNamesSymbol, xdims);
UNPROTECT(1); /* xdims */
}
/* This was removed for matrices in 1998
copyMostAttrib(x, result); */
/* Free temporary memory */
vmaxset(vmaxsave);
if (drop)
DropDims(result);
UNPROTECT(2); /* dimnamesnames, result */
return result;
}
/* Returns and removes a named argument from argument list args.
The search ends as soon as a matching argument is found. If
the argument is not found, the argument list is not modified
and R_NilValue is returned.
*/
static SEXP ExtractArg(SEXP args, SEXP arg_sym)
{
SEXP arg, prev_arg;
int found = 0;
for (arg = prev_arg = args; arg != R_NilValue; arg = CDR(arg)) {
if(TAG(arg) == arg_sym) {
if (arg == prev_arg) /* found at head of args */
args = CDR(args);
else
SETCDR(prev_arg, CDR(arg));
found = 1;
break;
}
else prev_arg = arg;
}
return found ? CAR(arg) : R_NilValue;
}
/* Extracts the drop argument, if present, from the argument list.
The object being subsetted must be the first argument. */
static void ExtractDropArg(SEXP el, int *drop)
{
SEXP dropArg = ExtractArg(el, R_DropSymbol);
*drop = asLogical(dropArg);
if (*drop == NA_LOGICAL) *drop = 1;
}
/* Extracts and, if present, removes the 'exact' argument from the
argument list. An integer code giving the desired exact matching
behavior is returned:
0 not exact
1 exact
-1 not exact, but warn when partial matching is used
*/
static int ExtractExactArg(SEXP args)
{
SEXP argval = ExtractArg(args, R_ExactSymbol);
int exact;
if(isNull(argval)) return 1; /* Default is true as from R 2.7.0 */
exact = asLogical(argval);
if (exact == NA_LOGICAL) exact = -1;
return exact;
}
/* Version of DispatchOrEval for "[" and friends that speeds up simple cases.
Also defined in subassign.c */
static R_INLINE
int R_DispatchOrEvalSP(SEXP call, SEXP op, const char *generic, SEXP args,
SEXP rho, SEXP *ans)
{
SEXP prom = NULL;
if (args != R_NilValue && CAR(args) != R_DotsSymbol) {
SEXP x = eval(CAR(args), rho);
PROTECT(x);
if (! OBJECT(x)) {
*ans = CONS_NR(x, evalListKeepMissing(CDR(args), rho));
UNPROTECT(1);
return FALSE;
}
prom = mkPROMISE(CAR(args), R_GlobalEnv);
SET_PRVALUE(prom, x);
args = CONS(prom, CDR(args));
UNPROTECT(1);
}
PROTECT(args);
int disp = DispatchOrEval(call, op, generic, args, rho, ans, 0, 0);
if (prom) DECREMENT_REFCNT(PRVALUE(prom));
UNPROTECT(1);
return disp;
}
/* The "[" subset operator.
* This provides the most general form of subsetting. */
SEXP attribute_hidden do_subset(SEXP call, SEXP op, SEXP args, SEXP rho)
{
SEXP ans;
/* If the first argument is an object and there is an */
/* approriate method, we dispatch to that method, */
/* otherwise we evaluate the arguments and fall through */
/* to the generic code below. Note that evaluation */
/* retains any missing argument indicators. */
if(R_DispatchOrEvalSP(call, op, "[", args, rho, &ans)) {
/* if(DispatchAnyOrEval(call, op, "[", args, rho, &ans, 0, 0)) */
if (NAMED(ans))
SET_NAMED(ans, 2);
return(ans);
}
/* Method dispatch has failed, we now */
/* run the generic internal code. */
return do_subset_dflt(call, op, ans, rho);
}
static R_INLINE R_xlen_t scalarIndex(SEXP s)
{
if (ATTRIB(s) == R_NilValue)
switch (TYPEOF(s)) {
case REALSXP: // treat infinite indices as NA, like asInteger
if (XLENGTH(s) == 1 && R_FINITE(REAL(s)[0]))
return (R_xlen_t) REAL(s)[0];
else return -1;
case INTSXP:
if (XLENGTH(s) == 1 && INTEGER(s)[0] != NA_INTEGER)
return INTEGER(s)[0];
else return -1;
default: return -1;
}
else return -1;
}
SEXP attribute_hidden do_subset_dflt(SEXP call, SEXP op, SEXP args, SEXP rho)
{
SEXP ans, ax, px, x, subs;
int drop, i, nsubs, type;
/* By default we drop extents of length 1 */
/* Handle cases of extracting a single element from a simple vector
or matrix directly to improve speed for these simple cases. */
SEXP cdrArgs = CDR(args);
SEXP cddrArgs = CDR(cdrArgs);
if (cdrArgs != R_NilValue && cddrArgs == R_NilValue &&
TAG(cdrArgs) == R_NilValue) {
/* one index, not named */
SEXP x = CAR(args);
if (ATTRIB(x) == R_NilValue) {
SEXP s = CAR(cdrArgs);
R_xlen_t i = scalarIndex(s);
switch (TYPEOF(x)) {
case REALSXP:
if (i >= 1 && i <= XLENGTH(x))
return ScalarReal( REAL(x)[i-1] );
break;
case INTSXP:
if (i >= 1 && i <= XLENGTH(x))
return ScalarInteger( INTEGER(x)[i-1] );
break;
case LGLSXP:
if (i >= 1 && i <= XLENGTH(x))
return ScalarLogical( LOGICAL(x)[i-1] );
break;
// do the more rare cases as well, since we've already prepared everything:
case CPLXSXP:
if (i >= 1 && i <= XLENGTH(x))
return ScalarComplex( COMPLEX(x)[i-1] );
break;
case RAWSXP:
if (i >= 1 && i <= XLENGTH(x))
return ScalarRaw( RAW(x)[i-1] );
break;
default: break;
}
}
}
else if (cddrArgs != R_NilValue && CDR(cddrArgs) == R_NilValue &&
TAG(cdrArgs) == R_NilValue && TAG(cddrArgs) == R_NilValue) {
/* two indices, not named */
SEXP x = CAR(args);
SEXP attr = ATTRIB(x);
if (TAG(attr) == R_DimSymbol && CDR(attr) == R_NilValue) {
/* only attribute of x is 'dim' */
SEXP dim = CAR(attr);
if (TYPEOF(dim) == INTSXP && LENGTH(dim) == 2) {
/* x is a matrix */
SEXP si = CAR(cdrArgs);
SEXP sj = CAR(cddrArgs);
R_xlen_t i = scalarIndex(si);
R_xlen_t j = scalarIndex(sj);
int nrow = INTEGER(dim)[0];
int ncol = INTEGER(dim)[1];
if (i > 0 && j > 0 && i <= nrow && j <= ncol) {
/* indices are legal scalars */
R_xlen_t k = i - 1 + nrow * (j - 1);
switch (TYPEOF(x)) {
case REALSXP:
if (k < LENGTH(x))
return ScalarReal( REAL(x)[k] );
break;
case INTSXP:
if (k < LENGTH(x))
return ScalarInteger( INTEGER(x)[k] );
break;
case LGLSXP:
if (k < LENGTH(x))
return ScalarLogical( LOGICAL(x)[k] );
break;
case CPLXSXP:
if (k < LENGTH(x))
return ScalarComplex( COMPLEX(x)[k] );
break;
case RAWSXP:
if (k < LENGTH(x))
return ScalarRaw( RAW(x)[k] );
break;
default: break;
}
}
}
}
}
PROTECT(args);
drop = 1;
ExtractDropArg(args, &drop);
x = CAR(args);
/* This was intended for compatibility with S, */
/* but in fact S does not do this. */
/* FIXME: replace the test by isNull ... ? */
if (x == R_NilValue) {
UNPROTECT(1);
return x;
}
subs = CDR(args);
nsubs = length(subs); /* Will be short */
type = TYPEOF(x);
/* Here coerce pair-based objects into generic vectors. */
/* All subsetting takes place on the generic vector form. */
ax = x;
if (isVector(x))
PROTECT(ax);
else if (isPairList(x)) {
SEXP dim = getAttrib(x, R_DimSymbol);
int ndim = length(dim);
if (ndim > 1) {
PROTECT(ax = allocArray(VECSXP, dim));
setAttrib(ax, R_DimNamesSymbol, getAttrib(x, R_DimNamesSymbol));
setAttrib(ax, R_NamesSymbol, getAttrib(x, R_DimNamesSymbol));
}
else {
PROTECT(ax = allocVector(VECSXP, length(x)));
setAttrib(ax, R_NamesSymbol, getAttrib(x, R_NamesSymbol));
}
for(px = x, i = 0 ; px != R_NilValue ; px = CDR(px))
SET_VECTOR_ELT(ax, i++, CAR(px));
}
else errorcall(call, R_MSG_ob_nonsub, type2char(TYPEOF(x)));
/* This is the actual subsetting code. */
/* The separation of arrays and matrices is purely an optimization. */
if(nsubs < 2) {
SEXP dim = getAttrib(x, R_DimSymbol);
int ndim = length(dim);
PROTECT(ans = VectorSubset(ax, (nsubs == 1 ? CAR(subs) : R_MissingArg),
call));
/* one-dimensional arrays went through here, and they should
have their dimensions dropped only if the result has
length one and drop == TRUE
*/
if(ndim == 1) {
SEXP attr, attrib, nattrib;
int len = length(ans);
if(!drop || len > 1) {
// must grab these before the dim is set.
SEXP nm = PROTECT(getAttrib(ans, R_NamesSymbol));
PROTECT(attr = allocVector(INTSXP, 1));
INTEGER(attr)[0] = length(ans);
setAttrib(ans, R_DimSymbol, attr);
if((attrib = getAttrib(x, R_DimNamesSymbol)) != R_NilValue) {
/* reinstate dimnames, include names of dimnames */
PROTECT(nattrib = duplicate(attrib));
SET_VECTOR_ELT(nattrib, 0, nm);
setAttrib(ans, R_DimNamesSymbol, nattrib);
setAttrib(ans, R_NamesSymbol, R_NilValue);
UNPROTECT(1);
}
UNPROTECT(2);
}
}
} else {
if (nsubs != length(getAttrib(x, R_DimSymbol)))
errorcall(call, _("incorrect number of dimensions"));
if (nsubs == 2)
ans = MatrixSubset(ax, subs, call, drop);
else
ans = ArraySubset(ax, subs, call, drop);
PROTECT(ans);
}
/* Note: we do not coerce back to pair-based lists. */
/* They are "defunct" in this version of R. */
if (type == LANGSXP) {
ax = ans;
PROTECT(ans = allocList(LENGTH(ax)));
if ( LENGTH(ax) > 0 )
SET_TYPEOF(ans, LANGSXP);
for(px = ans, i = 0 ; px != R_NilValue ; px = CDR(px))
SETCAR(px, VECTOR_ELT(ax, i++));
setAttrib(ans, R_DimSymbol, getAttrib(ax, R_DimSymbol));
setAttrib(ans, R_DimNamesSymbol, getAttrib(ax, R_DimNamesSymbol));
setAttrib(ans, R_NamesSymbol, getAttrib(ax, R_NamesSymbol));
SET_NAMED(ans, NAMED(ax)); /* PR#7924 */
}
else {
PROTECT(ans);
}
if (ATTRIB(ans) != R_NilValue) { /* remove probably erroneous attr's */
setAttrib(ans, R_TspSymbol, R_NilValue);
#ifdef _S4_subsettable
if(!IS_S4_OBJECT(x))
#endif
setAttrib(ans, R_ClassSymbol, R_NilValue);
}
UNPROTECT(4);
return ans;
}
/* The [[ subset operator. It needs to be fast. */
/* The arguments to this call are evaluated on entry. */
SEXP attribute_hidden do_subset2(SEXP call, SEXP op, SEXP args, SEXP rho)
{
SEXP ans;
/* If the first argument is an object and there is */
/* an approriate method, we dispatch to that method, */
/* otherwise we evaluate the arguments and fall */
/* through to the generic code below. Note that */
/* evaluation retains any missing argument indicators. */
if(R_DispatchOrEvalSP(call, op, "[[", args, rho, &ans)) {
if (NAMED(ans))
SET_NAMED(ans, 2);
return(ans);
}
/* Method dispatch has failed. */
/* We now run the generic internal code. */
return do_subset2_dflt(call, op, ans, rho);
}
SEXP attribute_hidden do_subset2_dflt(SEXP call, SEXP op, SEXP args, SEXP rho)
{
SEXP ans, dims, dimnames, indx, subs, x;
int i, ndims, nsubs;
int drop = 1, pok, exact = -1;
int named_x;
R_xlen_t offset = 0;
PROTECT(args);
ExtractDropArg(args, &drop);
/* Is partial matching ok? When the exact arg is NA, a warning is
issued if partial matching occurs.
*/
exact = ExtractExactArg(args);
if (exact == -1)
pok = exact;
else
pok = !exact;
x = CAR(args);
/* This code was intended for compatibility with S, */
/* but in fact S does not do this. Will anyone notice? */
if (x == R_NilValue) {
UNPROTECT(1); /* args */
return x;
}
/* Get the subscripting and dimensioning information */
/* and check that any array subscripting is compatible. */
subs = CDR(args);
if(0 == (nsubs = length(subs)))
errorcall(call, _("no index specified"));
dims = getAttrib(x, R_DimSymbol);
ndims = length(dims);
if(nsubs > 1 && nsubs != ndims)
errorcall(call, _("incorrect number of subscripts"));
/* code to allow classes to extend environment */
if(TYPEOF(x) == S4SXP) {
x = R_getS4DataSlot(x, ANYSXP);
if(x == R_NilValue)
errorcall(call, _("this S4 class is not subsettable"));
}
PROTECT(x);
/* split out ENVSXP for now */
if( TYPEOF(x) == ENVSXP ) {
if( nsubs != 1 || !isString(CAR(subs)) || length(CAR(subs)) != 1 )
errorcall(call, _("wrong arguments for subsetting an environment"));
ans = findVarInFrame(x, installTrChar(STRING_ELT(CAR(subs), 0)));
if( TYPEOF(ans) == PROMSXP ) {
PROTECT(ans);
ans = eval(ans, R_GlobalEnv);
UNPROTECT(1); /* ans */
} else SET_NAMED(ans, 2);
UNPROTECT(2); /* args, x */
if(ans == R_UnboundValue)
return(R_NilValue);
if (NAMED(ans))
SET_NAMED(ans, 2);
return ans;
}
/* back to the regular program */
if (!(isVector(x) || isList(x) || isLanguage(x)))
errorcall(call, R_MSG_ob_nonsub, type2char(TYPEOF(x)));
named_x = NAMED(x); /* x may change below; save this now. See PR#13411 */
if(nsubs == 1) { /* vector indexing */
SEXP thesub = CAR(subs);
int len = length(thesub);
if (len > 1) {
#ifdef SWITCH_TO_REFCNT
if (IS_GETTER_CALL(call)) {
/* this is (most likely) a getter call in a complex
assighment so we duplicate as needed. The original
x should have been duplicated if it might be
shared */
if (MAYBE_SHARED(x))
error("getter call used outside of a complex assignment.");
x = vectorIndex(x, thesub, 0, len-1, pok, call, TRUE);
}
else
x = vectorIndex(x, thesub, 0, len-1, pok, call, FALSE);
#else
x = vectorIndex(x, thesub, 0, len-1, pok, call, FALSE);
#endif