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Error in gc.correct.wgs #48

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jazberna1 opened this issue Apr 3, 2020 · 0 comments
Closed

Error in gc.correct.wgs #48

jazberna1 opened this issue Apr 3, 2020 · 0 comments

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@jazberna1
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Hello,

At some point in my Battengerg run I get the following error:

Error in [.data.frame(GC_data, , 2 + maxGCcol_short) :
undefined columns selected
Calls: gc.correct.wgs -> [ -> [.data.frame
In addition: Warning message:
In cor(GC_data[flag_nona, 3:ncol(GC_data)], Tumor_LogR[flag_nona, :
the standard deviation is zero

I was wondering if you could please help me to debug the error.

Many thanks
Jorge

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