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|---|---|---|
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| conda create -n RSAIGE r-essentials r-base=3.6.1 python=2.7 | ||
| conda activate RSAIGE | ||
| conda install -c anaconda cmake | ||
| conda install -c conda-forge gettext lapack r-matrix | ||
| conda install -c r r-rcpp r-rcpparmadillo r-data.table r-bh | ||
| conda install -c conda-forge r-spatest r-rcppeigen r-devtools r-skat r-rcppparallel r-optparse boost openblas | ||
| pip3 install cget click | ||
| conda env export > environment-RSAIGE.yml |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,290 @@ | ||
| name: RSAIGE | ||
| channels: | ||
| - r | ||
| - anaconda | ||
| - conda-forge | ||
| - defaults | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=main | ||
| - _r-mutex=1.0.0=anacondar_1 | ||
| - attrs=19.3.0=py_0 | ||
| - backports=1.0=py_2 | ||
| - backports.shutil_get_terminal_size=1.0.0=py27_2 | ||
| - backports_abc=0.5=py27_0 | ||
| - binutils_impl_linux-64=2.28.1=had2808c_3 | ||
| - binutils_linux-64=7.2.0=had2808c_27 | ||
| - bleach=3.1.0=py27_0 | ||
| - boost=1.70.0=py27h9de70de_1 | ||
| - boost-cpp=1.70.0=ha2d47e9_1 | ||
| - bwidget=1.9.11=1 | ||
| - bzip2=1.0.8=h7b6447c_0 | ||
| - ca-certificates=2019.9.11=hecc5488_0 | ||
| - cairo=1.14.12=h8948797_3 | ||
| - certifi=2019.9.11=py27_0 | ||
| - cmake=3.14.0=h52cb24c_0 | ||
| - configparser=4.0.2=py27_0 | ||
| - contextlib2=0.6.0=py_0 | ||
| - curl=7.65.3=hbc83047_0 | ||
| - decorator=4.4.1=py_0 | ||
| - defusedxml=0.6.0=py_0 | ||
| - entrypoints=0.3=py27_0 | ||
| - enum34=1.1.6=py27_1 | ||
| - expat=2.2.6=he6710b0_0 | ||
| - fontconfig=2.13.0=h9420a91_0 | ||
| - freetype=2.9.1=h8a8886c_1 | ||
| - fribidi=1.0.5=h7b6447c_0 | ||
| - functools32=3.2.3.2=py27_1 | ||
| - futures=3.3.0=py27_0 | ||
| - gcc_impl_linux-64=7.2.0=habb00fd_3 | ||
| - gcc_linux-64=7.2.0=h550dcbe_27 | ||
| - gettext=0.19.8.1=hc5be6a0_1002 | ||
| - gfortran_impl_linux-64=7.2.0=hdf63c60_3 | ||
| - gfortran_linux-64=7.2.0=h550dcbe_27 | ||
| - glib=2.56.2=hd408876_0 | ||
| - gmp=6.1.2=h6c8ec71_1 | ||
| - graphite2=1.3.13=h23475e2_0 | ||
| - gsl=2.4=h14c3975_4 | ||
| - gxx_impl_linux-64=7.2.0=hdf63c60_3 | ||
| - gxx_linux-64=7.2.0=h550dcbe_27 | ||
| - harfbuzz=1.8.8=hffaf4a1_0 | ||
| - icu=58.2=h9c2bf20_1 | ||
| - importlib_metadata=0.23=py27_0 | ||
| - ipaddress=1.0.23=py_0 | ||
| - ipykernel=4.10.0=py27_0 | ||
| - ipython=5.8.0=py27_0 | ||
| - ipython_genutils=0.2.0=py27_0 | ||
| - jinja2=2.10.3=py_0 | ||
| - jpeg=9b=h024ee3a_2 | ||
| - jsonschema=3.1.1=py27_0 | ||
| - jupyter_client=5.3.4=py27_0 | ||
| - jupyter_core=4.6.1=py27_0 | ||
| - krb5=1.16.1=h173b8e3_7 | ||
| - lapack=3.6.1=ha44fe06_2 | ||
| - libblas=3.8.0=14_openblas | ||
| - libcblas=3.8.0=14_openblas | ||
| - libcurl=7.65.3=h20c2e04_0 | ||
| - libedit=3.1.20181209=hc058e9b_0 | ||
| - libffi=3.2.1=hd88cf55_4 | ||
| - libgcc-ng=9.1.0=hdf63c60_0 | ||
| - libgfortran=3.0.0=1 | ||
| - libgfortran-ng=7.3.0=hdf63c60_0 | ||
| - liblapack=3.8.0=14_openblas | ||
| - libopenblas=0.3.7=h6e990d7_3 | ||
| - libpng=1.6.37=hbc83047_0 | ||
| - libsodium=1.0.16=h1bed415_0 | ||
| - libssh2=1.8.2=h1ba5d50_0 | ||
| - libstdcxx-ng=9.1.0=hdf63c60_0 | ||
| - libtiff=4.1.0=h2733197_0 | ||
| - libuuid=1.0.3=h1bed415_2 | ||
| - libxcb=1.13=h1bed415_1 | ||
| - libxml2=2.9.9=hea5a465_1 | ||
| - make=4.2.1=h1bed415_1 | ||
| - markupsafe=1.1.1=py27h7b6447c_0 | ||
| - mistune=0.8.4=py27h7b6447c_0 | ||
| - more-itertools=5.0.0=py27_0 | ||
| - nbconvert=5.6.1=py27_0 | ||
| - nbformat=4.4.0=py27_0 | ||
| - ncurses=6.1=he6710b0_1 | ||
| - notebook=5.7.8=py27_0 | ||
| - numpy=1.16.5=py27h95a1406_0 | ||
| - openblas=0.3.7=h6e990d7_3 | ||
| - openssl=1.1.1d=h516909a_0 | ||
| - pandoc=2.2.3.2=0 | ||
| - pandocfilters=1.4.2=py27_1 | ||
| - pango=1.42.4=h049681c_0 | ||
| - pathlib2=2.3.5=py27_0 | ||
| - pcre=8.43=he6710b0_0 | ||
| - pexpect=4.7.0=py27_0 | ||
| - pickleshare=0.7.5=py27_0 | ||
| - pip=19.3.1=py27_0 | ||
| - pixman=0.38.0=h7b6447c_0 | ||
| - prometheus_client=0.7.1=py_0 | ||
| - prompt_toolkit=1.0.15=py27_0 | ||
| - ptyprocess=0.6.0=py27_0 | ||
| - pygments=2.4.2=py_0 | ||
| - pyrsistent=0.15.4=py27h7b6447c_0 | ||
| - python=2.7.17=h9bab390_0 | ||
| - python-dateutil=2.8.1=py_0 | ||
| - pyzmq=17.1.2=py27h14c3975_0 | ||
| - r-askpass=1.0=r36h14c3975_0 | ||
| - r-assertthat=0.2.1=r36h6115d3f_0 | ||
| - r-backports=1.1.4=r36h96ca727_0 | ||
| - r-base=3.6.1=h9bb98a2_1 | ||
| - r-base64enc=0.1_3=r36h96ca727_4 | ||
| - r-bh=1.69.0_1=r36h6115d3f_0 | ||
| - r-boot=1.3_20=r36h6115d3f_0 | ||
| - r-broom=0.5.2=r36h6115d3f_0 | ||
| - r-callr=3.2.0=r36h6115d3f_0 | ||
| - r-caret=6.0_83=r36h96ca727_0 | ||
| - r-cellranger=1.1.0=r36h6115d3f_0 | ||
| - r-class=7.3_15=r36h96ca727_0 | ||
| - r-cli=1.1.0=r36h6115d3f_0 | ||
| - r-clipr=0.6.0=r36h6115d3f_0 | ||
| - r-clisymbols=1.2.0=r36h6115d3f_1002 | ||
| - r-cluster=2.0.8=r36ha65eedd_0 | ||
| - r-codetools=0.2_16=r36h6115d3f_0 | ||
| - r-colorspace=1.4_1=r36h96ca727_0 | ||
| - r-crayon=1.3.4=r36h6115d3f_0 | ||
| - r-curl=3.3=r36h96ca727_0 | ||
| - r-data.table=1.12.2=r36h96ca727_0 | ||
| - r-dbi=1.0.0=r36h6115d3f_0 | ||
| - r-dbplyr=1.4.0=r36h6115d3f_0 | ||
| - r-desc=1.2.0=r36h6115d3f_1002 | ||
| - r-devtools=2.0.2=r36h6115d3f_0 | ||
| - r-dichromat=2.0_0=r36h6115d3f_4 | ||
| - r-digest=0.6.18=r36h96ca727_0 | ||
| - r-dplyr=0.8.0.1=r36h29659fb_0 | ||
| - r-ellipsis=0.1.0=r36h96ca727_0 | ||
| - r-essentials=3.6.0=r36_0 | ||
| - r-evaluate=0.13=r36h6115d3f_0 | ||
| - r-fansi=0.4.0=r36h96ca727_0 | ||
| - r-forcats=0.4.0=r36h6115d3f_0 | ||
| - r-foreach=1.4.4=r36h6115d3f_0 | ||
| - r-foreign=0.8_71=r36h96ca727_0 | ||
| - r-formatr=1.6=r36h6115d3f_0 | ||
| - r-fs=1.2.7=r36h29659fb_0 | ||
| - r-generics=0.0.2=r36h6115d3f_0 | ||
| - r-getopt=1.20.3=r36_1 | ||
| - r-ggplot2=3.1.1=r36h6115d3f_0 | ||
| - r-gh=1.0.1=r36h6115d3f_1002 | ||
| - r-git2r=0.26.1=r36h5ca76e2_1 | ||
| - r-glmnet=2.0_16=r36ha65eedd_0 | ||
| - r-glue=1.3.1=r36h96ca727_0 | ||
| - r-gower=0.2.0=r36h96ca727_0 | ||
| - r-gtable=0.3.0=r36h6115d3f_0 | ||
| - r-haven=2.1.0=r36h29659fb_0 | ||
| - r-hexbin=1.27.2=r36ha65eedd_0 | ||
| - r-highr=0.8=r36h6115d3f_0 | ||
| - r-hms=0.4.2=r36h6115d3f_0 | ||
| - r-htmltools=0.3.6=r36h29659fb_0 | ||
| - r-htmlwidgets=1.3=r36h6115d3f_0 | ||
| - r-httpuv=1.5.1=r36h29659fb_0 | ||
| - r-httr=1.4.0=r36h6115d3f_0 | ||
| - r-ini=0.3.1=r36h6115d3f_1002 | ||
| - r-ipred=0.9_8=r36h96ca727_0 | ||
| - r-irdisplay=0.7.0=r36h6115d3f_0 | ||
| - r-irkernel=0.8.15=r36_0 | ||
| - r-iterators=1.0.10=r36h6115d3f_0 | ||
| - r-jsonlite=1.6=r36h96ca727_0 | ||
| - r-kernsmooth=2.23_15=r36ha65eedd_4 | ||
| - r-knitr=1.22=r36h6115d3f_0 | ||
| - r-labeling=0.3=r36h6115d3f_4 | ||
| - r-later=0.8.0=r36h29659fb_0 | ||
| - r-lattice=0.20_38=r36h96ca727_0 | ||
| - r-lava=1.6.5=r36h6115d3f_0 | ||
| - r-lazyeval=0.2.2=r36h96ca727_0 | ||
| - r-lubridate=1.7.4=r36h29659fb_0 | ||
| - r-magrittr=1.5=r36h6115d3f_4 | ||
| - r-maps=3.3.0=r36h96ca727_0 | ||
| - r-markdown=0.9=r36h96ca727_0 | ||
| - r-mass=7.3_51.3=r36h96ca727_0 | ||
| - r-matrix=1.2_17=r36hcdcec82_1 | ||
| - r-memoise=1.1.0=r36h6115d3f_1003 | ||
| - r-mgcv=1.8_28=r36h96ca727_0 | ||
| - r-mime=0.6=r36h96ca727_0 | ||
| - r-modelmetrics=1.2.2=r36h29659fb_0 | ||
| - r-modelr=0.1.4=r36h6115d3f_0 | ||
| - r-munsell=0.5.0=r36h6115d3f_0 | ||
| - r-nlme=3.1_139=r36ha65eedd_0 | ||
| - r-nnet=7.3_12=r36h96ca727_0 | ||
| - r-numderiv=2016.8_1=r36h6115d3f_0 | ||
| - r-openssl=1.3=r36h96ca727_0 | ||
| - r-optparse=1.6.4=r36h6115d3f_0 | ||
| - r-pbdzmq=0.3_3=r36h29659fb_0 | ||
| - r-pillar=1.3.1=r36h6115d3f_0 | ||
| - r-pkgbuild=1.0.6=r36h6115d3f_0 | ||
| - r-pkgconfig=2.0.2=r36h6115d3f_0 | ||
| - r-pkgload=1.0.2=r36h0357c0b_1001 | ||
| - r-plogr=0.2.0=r36h6115d3f_0 | ||
| - r-plyr=1.8.4=r36h29659fb_0 | ||
| - r-prettyunits=1.0.2=r36h6115d3f_0 | ||
| - r-processx=3.3.0=r36h96ca727_0 | ||
| - r-prodlim=2018.04.18=r36h29659fb_0 | ||
| - r-progress=1.2.0=r36h6115d3f_0 | ||
| - r-promises=1.0.1=r36h29659fb_0 | ||
| - r-ps=1.3.0=r36h96ca727_0 | ||
| - r-purrr=0.3.2=r36h96ca727_0 | ||
| - r-quantmod=0.4_14=r36h6115d3f_0 | ||
| - r-r6=2.4.0=r36h6115d3f_0 | ||
| - r-randomforest=4.6_14=r36ha65eedd_0 | ||
| - r-rbokeh=0.6.3=r36_0 | ||
| - r-rcmdcheck=1.3.3=r36h6115d3f_2 | ||
| - r-rcolorbrewer=1.1_2=r36h6115d3f_0 | ||
| - r-rcpp=1.0.1=r36h29659fb_0 | ||
| - r-rcpparmadillo=0.9.300.2.0=r36h29659fb_0 | ||
| - r-rcppeigen=0.3.3.7.0=r36h0357c0b_0 | ||
| - r-rcppparallel=4.4.4=r36h0357c0b_0 | ||
| - r-rcpproll=0.3.0=r36h29659fb_0 | ||
| - r-readr=1.3.1=r36h29659fb_0 | ||
| - r-readxl=1.3.1=r36h29659fb_0 | ||
| - r-recipes=0.1.5=r36h6115d3f_0 | ||
| - r-recommended=3.6.0=r36_0 | ||
| - r-rematch=1.0.1=r36h6115d3f_0 | ||
| - r-remotes=2.1.0=r36h6115d3f_1 | ||
| - r-repr=0.19.2=r36h6115d3f_0 | ||
| - r-reprex=0.2.1=r36h6115d3f_0 | ||
| - r-reshape2=1.4.3=r36h29659fb_0 | ||
| - r-rlang=0.3.4=r36h96ca727_0 | ||
| - r-rmarkdown=1.12=r36h6115d3f_0 | ||
| - r-rpart=4.1_15=r36h96ca727_0 | ||
| - r-rprojroot=1.3_2=r36h6115d3f_1002 | ||
| - r-rstudioapi=0.10=r36h6115d3f_0 | ||
| - r-rvest=0.3.3=r36h6115d3f_0 | ||
| - r-scales=1.0.0=r36h29659fb_0 | ||
| - r-selectr=0.4_1=r36h6115d3f_0 | ||
| - r-sessioninfo=1.1.1=r36h6115d3f_1001 | ||
| - r-shiny=1.3.2=r36h6115d3f_0 | ||
| - r-skat=1.3.2.1=r36he1b5a44_1002 | ||
| - r-sourcetools=0.1.7=r36h29659fb_0 | ||
| - r-spatest=3.0.0=r36h6115d3f_1001 | ||
| - r-spatial=7.3_11=r36h96ca727_4 | ||
| - r-squarem=2017.10_1=r36h6115d3f_0 | ||
| - r-stringi=1.4.3=r36h29659fb_0 | ||
| - r-stringr=1.4.0=r36h6115d3f_0 | ||
| - r-survival=2.44_1.1=r36h96ca727_0 | ||
| - r-sys=3.2=r36h96ca727_0 | ||
| - r-tibble=2.1.1=r36h96ca727_0 | ||
| - r-tidyr=0.8.3=r36h29659fb_0 | ||
| - r-tidyselect=0.2.5=r36h29659fb_0 | ||
| - r-tidyverse=1.2.1=r36h6115d3f_0 | ||
| - r-timedate=3043.102=r36h6115d3f_0 | ||
| - r-tinytex=0.12=r36h6115d3f_0 | ||
| - r-ttr=0.23_4=r36ha65eedd_0 | ||
| - r-usethis=1.5.0=r36h6115d3f_0 | ||
| - r-utf8=1.1.4=r36h96ca727_0 | ||
| - r-uuid=0.1_2=r36h96ca727_4 | ||
| - r-viridislite=0.3.0=r36h6115d3f_0 | ||
| - r-whisker=0.3_2=r36h6115d3f_4 | ||
| - r-withr=2.1.2=r36h6115d3f_0 | ||
| - r-xfun=0.6=r36h6115d3f_0 | ||
| - r-xml2=1.2.0=r36h29659fb_0 | ||
| - r-xopen=1.0.0=r36h6115d3f_1002 | ||
| - r-xtable=1.8_4=r36h6115d3f_0 | ||
| - r-xts=0.11_2=r36h96ca727_0 | ||
| - r-yaml=2.2.0=r36h96ca727_0 | ||
| - r-zoo=1.8_6=r36h96ca727_0 | ||
| - readline=7.0=h7b6447c_5 | ||
| - rhash=1.3.8=h1ba5d50_0 | ||
| - scandir=1.10.0=py27h7b6447c_0 | ||
| - send2trash=1.5.0=py27_0 | ||
| - setuptools=41.6.0=py27_0 | ||
| - simplegeneric=0.8.1=py27_2 | ||
| - singledispatch=3.4.0.3=py27_0 | ||
| - six=1.13.0=py27_0 | ||
| - sqlite=3.30.1=h7b6447c_0 | ||
| - terminado=0.8.2=py27_0 | ||
| - testpath=0.4.2=py27_0 | ||
| - tk=8.6.8=hbc83047_0 | ||
| - tktable=2.10=h14c3975_0 | ||
| - tornado=5.1.1=py27h7b6447c_0 | ||
| - traitlets=4.3.3=py27_0 | ||
| - wcwidth=0.1.7=py27_0 | ||
| - webencodings=0.5.1=py27_1 | ||
| - wheel=0.33.6=py27_0 | ||
| - xz=5.2.4=h14c3975_4 | ||
| - zeromq=4.2.5=hf484d3e_1 | ||
| - zipp=0.6.0=py_0 | ||
| - zlib=1.2.11=h7b6447c_3 | ||
| - zstd=1.3.7=h0b5b093_0 | ||
| prefix: /home/wei/anaconda2/envs/RSAIGE | ||
|
|