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I am trying to make a reproducible build, in order to fork this package to permit separate .bim/.bed/.fam files (see #40 ). However, I cannot easily reproduce your build, because this .git repo is full of symlinks. E.g.:
~/code/SAIGE/thirdParty/cget/bin $ ls -l
sav -> /net/hunt/zhowei/project/imbalancedCaseCtrlMixedModel/Rpackage_SPAGMMAT/SAIGE/thirdParty/cget/cget/pkg/statgen__savvy/install/bin/sav
As you can see, this file (and many others) symlink to something that expects to be at the path /net/hunt/zhowei . Is it possible to remove the symlinks and to instead include the dependencies?
The text was updated successfully, but these errors were encountered:
I tried to manually replace the symlinks and the compilation failed after then. It seems that the way to solve the symlinks issue is after you download the SAIGE folder, rm -r cget in the thirdParty folder and re-download and install the savvy library
I am trying to make a reproducible build, in order to fork this package to permit separate .bim/.bed/.fam files (see #40 ). However, I cannot easily reproduce your build, because this .git repo is full of symlinks. E.g.:
As you can see, this file (and many others) symlink to something that expects to be at the path /net/hunt/zhowei . Is it possible to remove the symlinks and to instead include the dependencies?
The text was updated successfully, but these errors were encountered: