Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

linux check error related to Entrez #37

Closed
jasonzhao0307 opened this issue Apr 24, 2019 · 3 comments
Closed

linux check error related to Entrez #37

jasonzhao0307 opened this issue Apr 24, 2019 · 3 comments

Comments

@jasonzhao0307
Copy link
Contributor

Running examples in animalcules-Ex.R failed
The error most likely occurred in:

base::assign(".ptime", proc.time(), pos = "CheckExEnv")

Name: find_taxonomy

Title: Find the taxonomy for unlimited tids

Aliases: find_taxonomy

** Examples

taxonLevels <- find_taxonomy(tids=1200)
Error in curl::curl_fetch_memory(url, handle = handle) :
Error in the HTTP2 framing layer
Calls: find_taxonomy ... request_fetch -> request_fetch.write_memory ->

ref:
ropensci/rentrez#127

@jasonzhao0307 jasonzhao0307 changed the title linux check error related to linux check error related to Entrez Apr 24, 2019
@jasonzhao0307
Copy link
Contributor Author

ropensci/rentrez#127 seems useful

@jasonzhao0307
Copy link
Contributor Author

jasonzhao0307 commented Apr 24, 2019

pushed a commit:
1ff88c4

not sure if this will affect speed, will probably change back later.

@dwinter
Copy link

dwinter commented May 2, 2019

Hi @jasonzhao0307 , in case this is still relevant, the latest version of rentrez (v.1.2.2 on CRAN now) has addressed the bug that was throwing these errors

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants