Install error

[lucygarner]

Hi,

I am getting the following error when trying to install liger. I am using macOS Mojave.

Is there a way to overcome this?

Best wishes,
Lucy

[vkozareva]

This is because macOS's default compiler doesn't support openMP (right now required by RcppArmadillo). Have you tried following the recommended extra steps for installation on macOS (detailed here)?

[lucygarner]

Thank you for the advice. I have followed the installation guide and run the "quick check" at the end, which works fine, however I am still getting an error when trying to install liger.

The error is now:

Is this a related error?

[vkozareva]

This has to do with Mojave -- did you make sure to follow the Mojave specific instructions for installing xcode CLI (found in a note on the post I referenced)? If that didn't work, can you see if any of the suggestions for installing xcode here work for you?

[lucygarner]

Thank you - I have manage to fix this by reinstalling Command Line tools and running:

sudo installer -pkg \ /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg \ -target /