Moved west_tools stuff to lib/west_tools; updated setup.sh

westpa · Dec 19, 2016 · 4115ddb · 4115ddb
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diff --git a/.hglog → .hglog-west_tools b/.hglog → .hglog-west_tools
diff --git a/examples/ex_fluxanl_plot.py → lib/west_tools/examples/ex_fluxanl_plot.py b/examples/ex_fluxanl_plot.py → lib/west_tools/examples/ex_fluxanl_plot.py
diff --git a/examples/ex_graphtest.py → lib/west_tools/examples/ex_graphtest.py b/examples/ex_graphtest.py → lib/west_tools/examples/ex_graphtest.py
diff --git a/fasthist/__init__.py → lib/west_tools/fasthist/__init__.py b/fasthist/__init__.py → lib/west_tools/fasthist/__init__.py
diff --git a/fasthist/__main__.py → lib/west_tools/fasthist/__main__.py b/fasthist/__main__.py → lib/west_tools/fasthist/__main__.py
diff --git a/fasthist/_fasthist.c → lib/west_tools/fasthist/_fasthist.c b/fasthist/_fasthist.c → lib/west_tools/fasthist/_fasthist.c
diff --git a/fasthist/_fasthist.pyx → lib/west_tools/fasthist/_fasthist.pyx b/fasthist/_fasthist.pyx → lib/west_tools/fasthist/_fasthist.pyx
diff --git a/functional_tests/t_mclib.py → lib/west_tools/functional_tests/t_mclib.py b/functional_tests/t_mclib.py → lib/west_tools/functional_tests/t_mclib.py
diff --git a/mclib/__init__.py → lib/west_tools/mclib/__init__.py b/mclib/__init__.py → lib/west_tools/mclib/__init__.py
diff --git a/mclib/__main__.py → lib/west_tools/mclib/__main__.py b/mclib/__main__.py → lib/west_tools/mclib/__main__.py
diff --git a/mclib/_mclib.c → lib/west_tools/mclib/_mclib.c b/mclib/_mclib.c → lib/west_tools/mclib/_mclib.c
diff --git a/mclib/_mclib.pyx → lib/west_tools/mclib/_mclib.pyx b/mclib/_mclib.pyx → lib/west_tools/mclib/_mclib.pyx
diff --git a/ploterr.py → lib/west_tools/ploterr.py b/ploterr.py → lib/west_tools/ploterr.py
diff --git a/plothist.py → lib/west_tools/plothist.py b/plothist.py → lib/west_tools/plothist.py
diff --git a/postanalysis/__init__.py → lib/west_tools/postanalysis/__init__.py b/postanalysis/__init__.py → lib/west_tools/postanalysis/__init__.py
diff --git a/postanalysis/_stats.pyx → lib/west_tools/postanalysis/_stats.pyx b/postanalysis/_stats.pyx → lib/west_tools/postanalysis/_stats.pyx
diff --git a/setup.py → lib/west_tools/setup.py b/setup.py → lib/west_tools/setup.py
diff --git a/tests/testbinning.py → lib/west_tools/tests/testbinning.py b/tests/testbinning.py → lib/west_tools/tests/testbinning.py
diff --git a/tests/testkinetics.py → lib/west_tools/tests/testkinetics.py b/tests/testkinetics.py → lib/west_tools/tests/testkinetics.py
diff --git a/tests/testyamlfe.py → lib/west_tools/tests/testyamlfe.py b/tests/testyamlfe.py → lib/west_tools/tests/testyamlfe.py
diff --git a/tool_tests/__init__.py → lib/west_tools/tool_tests/__init__.py b/tool_tests/__init__.py → lib/west_tools/tool_tests/__init__.py
diff --git a/tool_tests/common.py → lib/west_tools/tool_tests/common.py b/tool_tests/common.py → lib/west_tools/tool_tests/common.py
diff --git a/tool_tests/test_w_fluxanl.py → lib/west_tools/tool_tests/test_w_fluxanl.py b/tool_tests/test_w_fluxanl.py → lib/west_tools/tool_tests/test_w_fluxanl.py
diff --git a/tool_tests/test_w_trace.py → lib/west_tools/tool_tests/test_w_trace.py b/tool_tests/test_w_trace.py → lib/west_tools/tool_tests/test_w_trace.py
diff --git a/trajtree/__init__.py → lib/west_tools/trajtree/__init__.py b/trajtree/__init__.py → lib/west_tools/trajtree/__init__.py
diff --git a/trajtree/_trajtree.c → lib/west_tools/trajtree/_trajtree.c b/trajtree/_trajtree.c → lib/west_tools/trajtree/_trajtree.c
diff --git a/trajtree/_trajtree.pyx → lib/west_tools/trajtree/_trajtree.pyx b/trajtree/_trajtree.pyx → lib/west_tools/trajtree/_trajtree.pyx
diff --git a/trajtree/trajtree.py → lib/west_tools/trajtree/trajtree.py b/trajtree/trajtree.py → lib/west_tools/trajtree/trajtree.py
diff --git a/w_assign.py → lib/west_tools/w_assign.py b/w_assign.py → lib/west_tools/w_assign.py
diff --git a/w_bins.py → lib/west_tools/w_bins.py b/w_bins.py → lib/west_tools/w_bins.py
diff --git a/w_crawl.py → lib/west_tools/w_crawl.py b/w_crawl.py → lib/west_tools/w_crawl.py
diff --git a/w_dumpsegs.py → lib/west_tools/w_dumpsegs.py b/w_dumpsegs.py → lib/west_tools/w_dumpsegs.py
diff --git a/w_eddist.py → lib/west_tools/w_eddist.py b/w_eddist.py → lib/west_tools/w_eddist.py
diff --git a/w_fluxanl.py → lib/west_tools/w_fluxanl.py b/w_fluxanl.py → lib/west_tools/w_fluxanl.py
diff --git a/w_kinavg.py → lib/west_tools/w_kinavg.py b/w_kinavg.py → lib/west_tools/w_kinavg.py
diff --git a/w_kinetics.py → lib/west_tools/w_kinetics.py b/w_kinetics.py → lib/west_tools/w_kinetics.py
diff --git a/w_ntop.py → lib/west_tools/w_ntop.py b/w_ntop.py → lib/west_tools/w_ntop.py
diff --git a/w_pdist.py → lib/west_tools/w_pdist.py b/w_pdist.py → lib/west_tools/w_pdist.py
diff --git a/w_postanalysis_matrix.py → lib/west_tools/w_postanalysis_matrix.py b/w_postanalysis_matrix.py → lib/west_tools/w_postanalysis_matrix.py
diff --git a/w_postanalysis_reweight.py → lib/west_tools/w_postanalysis_reweight.py b/w_postanalysis_reweight.py → lib/west_tools/w_postanalysis_reweight.py
diff --git a/w_select.py → lib/west_tools/w_select.py b/w_select.py → lib/west_tools/w_select.py
diff --git a/w_stateprobs.py → lib/west_tools/w_stateprobs.py b/w_stateprobs.py → lib/west_tools/w_stateprobs.py
diff --git a/w_trace.py → lib/west_tools/w_trace.py b/w_trace.py → lib/west_tools/w_trace.py
diff --git a/westpa/__init__.py → lib/west_tools/westpa/__init__.py b/westpa/__init__.py → lib/west_tools/westpa/__init__.py
diff --git a/westpa/_rc.py → lib/west_tools/westpa/_rc.py b/westpa/_rc.py → lib/west_tools/westpa/_rc.py
diff --git a/westpa/binning/__init__.py → lib/west_tools/westpa/binning/__init__.py b/westpa/binning/__init__.py → lib/west_tools/westpa/binning/__init__.py
diff --git a/westpa/binning/_assign.c → lib/west_tools/westpa/binning/_assign.c b/westpa/binning/_assign.c → lib/west_tools/westpa/binning/_assign.c
diff --git a/westpa/binning/_assign.pyx → lib/west_tools/westpa/binning/_assign.pyx b/westpa/binning/_assign.pyx → lib/west_tools/westpa/binning/_assign.pyx
diff --git a/westpa/binning/assign.py → lib/west_tools/westpa/binning/assign.py b/westpa/binning/assign.py → lib/west_tools/westpa/binning/assign.py
diff --git a/westpa/binning/bins.py → lib/west_tools/westpa/binning/bins.py b/westpa/binning/bins.py → lib/west_tools/westpa/binning/bins.py
diff --git a/westpa/extloader.py → lib/west_tools/westpa/extloader.py b/westpa/extloader.py → lib/west_tools/westpa/extloader.py
diff --git a/westpa/h5io.py → lib/west_tools/westpa/h5io.py b/westpa/h5io.py → lib/west_tools/westpa/h5io.py
diff --git a/westpa/kinetics/__init__.py → lib/west_tools/westpa/kinetics/__init__.py b/westpa/kinetics/__init__.py → lib/west_tools/westpa/kinetics/__init__.py
diff --git a/westpa/kinetics/_kinetics.c → lib/west_tools/westpa/kinetics/_kinetics.c b/westpa/kinetics/_kinetics.c → lib/west_tools/westpa/kinetics/_kinetics.c
diff --git a/westpa/kinetics/_kinetics.pyx → lib/west_tools/westpa/kinetics/_kinetics.pyx b/westpa/kinetics/_kinetics.pyx → lib/west_tools/westpa/kinetics/_kinetics.pyx
diff --git a/westpa/kinetics/matrates.py → lib/west_tools/westpa/kinetics/matrates.py b/westpa/kinetics/matrates.py → lib/west_tools/westpa/kinetics/matrates.py
diff --git a/westpa/kinetics/rate_averaging.py → ...t_tools/westpa/kinetics/rate_averaging.py b/westpa/kinetics/rate_averaging.py → ...t_tools/westpa/kinetics/rate_averaging.py
diff --git a/westpa/progress.py → lib/west_tools/westpa/progress.py b/westpa/progress.py → lib/west_tools/westpa/progress.py
diff --git a/westpa/textio.py → lib/west_tools/westpa/textio.py b/westpa/textio.py → lib/west_tools/westpa/textio.py
diff --git a/westpa/yamlcfg.py → lib/west_tools/westpa/yamlcfg.py b/westpa/yamlcfg.py → lib/west_tools/westpa/yamlcfg.py
diff --git a/westtools/__init__.py → lib/west_tools/westtools/__init__.py b/westtools/__init__.py → lib/west_tools/westtools/__init__.py
diff --git a/westtools/binning.py → lib/west_tools/westtools/binning.py b/westtools/binning.py → lib/west_tools/westtools/binning.py
diff --git a/westtools/core.py → lib/west_tools/westtools/core.py b/westtools/core.py → lib/west_tools/westtools/core.py
diff --git a/westtools/data_reader.py → lib/west_tools/westtools/data_reader.py b/westtools/data_reader.py → lib/west_tools/westtools/data_reader.py
diff --git a/westtools/dtypes.py → lib/west_tools/westtools/dtypes.py b/westtools/dtypes.py → lib/west_tools/westtools/dtypes.py
diff --git a/westtools/iter_range.py → lib/west_tools/westtools/iter_range.py b/westtools/iter_range.py → lib/west_tools/westtools/iter_range.py
diff --git a/westtools/progress.py → lib/west_tools/westtools/progress.py b/westtools/progress.py → lib/west_tools/westtools/progress.py
diff --git a/westtools/selected_segs.py → lib/west_tools/westtools/selected_segs.py b/westtools/selected_segs.py → lib/west_tools/westtools/selected_segs.py
diff --git a/setup.sh b/setup.sh
@@ -24,7 +24,6 @@ fi
 find . -name \*.so -print0 | xargs -0 rm &> /dev/null
 
 checkout_remote blessings  git://github.com/erikrose/blessings.git d3ba51c5870d599b40b387ac6703805c3e23d292 || exit 1
-checkout_remote west_tools git://github.com/westpa/west_tools.git  0047ea1b859596aca04dadc88068d9f854d0e4d2 || exit 1
 
 if [[ -d lib/h5py ]] ; then
     echo "using custom h5py located in $PWD/lib/h5py"