In Depth Video Discussions

Table of Contents In-Depth Video Discussions WESTPA Analysis Tools WESTPA Plug-ins Non-Spatial WESTPA simulations (system biology) Video Tutorials from 2015 WESTPA Workshop Presentation Slides from 2018 WESTPA Workshop Video Tutorials from 2018 WESTPA Workshop

In-Depth Video Discussions

These discussions are mainly from WESTPA workshops of years past and contain many great tips and bits of information from experienced users.

WESTPA Analysis Tools

• Sinan Saglam: WESTPA analysis tools
• The WESTPA w_ipa analysis tool

WESTPA Plug-ins

• Weighted Ensemble-Based String Method
• WExplore Plugin for WESTPA

Non-Spatial WESTPA simulations (system biology)

• Rory Donovan: WESTPA and MCell (non-spatial simulations).
• Sinan Saglam/AJ Pratt: WESTPA/BioNetGen API and highly scalable storage of WESTPA data. Also, see the GitHub repo for WESTPA and BioNetGen (systems biology software).

Video Tutorials from 2015 WESTPA Workshop

• Matthew Zwier: The WESTPA software package
• Rory Donovan: WESTPA and MCell (non-spatial simulations).
• Sinan Saglam: WESTPA analysis tools

Presentation Slides from 2018 WESTPA Workshop

• Lillian Chong: Introduction to WE/WESTPA and recent applications
• Sinan Saglam/AJ Pratt: WESTPA/BioNetGen API and highly scalable storage of WESTPA data. Also, see the GitHub repo for WESTPA and BioNetGen (systems biology software).
• Alex Dickson: The WExplore hierarchical weighted ensemble strategy
• Elizabeth Read: Sampling rare events in cell fate decisions (systems biology)
• Daniel Zuckerman: How far can we push WE today?

Video Tutorials from 2018 WESTPA Workshop

• The WESTPA w_ipa analysis tool
• WExplore Plugin for WESTPA