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add zipping of SAM files to conserve storage #180

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royoelen
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@royoelen royoelen commented May 9, 2023

Reduce the storage footprint of the demultiplexing process

  • zipping the SAM files generated during the remapping step
  • reading the zipped SAM files used during the remapping step

@wheaton5
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wheaton5 commented May 9, 2023

Code looks good. If you have tested this, I will merge.

@royoelen
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I have tested it. We actually used it quite a bit, so it should be okay.

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