Smoke Test #48
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| # Create a smoketest that just installs the biobear python package and reads an example file | |
| name: Smoke Test | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '0 0 */5 * *' | |
| jobs: | |
| test-package-conda: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.10'] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge | |
| miniconda-version: 'latest' | |
| activate-environment: biobear | |
| - name: Read example fasta file | |
| shell: bash -l {0} | |
| run: | | |
| conda info | |
| conda install -c conda-forge -n biobear biobear polars | |
| conda run -n biobear python ./.github/workflows/smoketest.py | |
| test-package-pip: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.10'] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install biobear | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install biobear polars | |
| - name: Read example fasta file | |
| shell: bash | |
| run: | | |
| python ./.github/workflows/smoketest.py |