Distributed training integrated and sedona registration updated #66
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Continuous Integration | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| paths-ignore: | |
| - 'README.md' | |
| - 'CONTRIBUTING.md' | |
| pull_request: | |
| branches: [ "main" ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - spark: '3.4.1' | |
| hadoop: '3' | |
| scala: '2.12.8' | |
| python: '3.10' | |
| spark_compat: '3.4' | |
| - spark: '3.4.1' | |
| hadoop: '3' | |
| scala: '2.12.8' | |
| python: '3.7' | |
| spark_compat: '3.4' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Download spark-hadoop | |
| env: | |
| SPARK_VERSION: ${{ matrix.spark }} | |
| HADOOP_VERSION: ${{ matrix.hadoop }} | |
| run: wget https://archive.apache.org/dist/spark/spark-${SPARK_VERSION}/spark-${SPARK_VERSION}-bin-hadoop${HADOOP_VERSION}.tgz | |
| - name: Install spark-hadoop | |
| env: | |
| SPARK_VERSION: ${{ matrix.spark }} | |
| HADOOP_VERSION: ${{ matrix.hadoop }} | |
| run: tar -xzf spark-${SPARK_VERSION}-bin-hadoop${HADOOP_VERSION}.tgz | |
| - run: sudo apt-get install -y python3-pip python3-dev libgeos-dev gdal-bin libgdal-dev | |
| - run: python3 -m pip install --upgrade pip | |
| - run: python3 -m pip install -U setuptools | |
| - run: python3 -m pip install -U wheel | |
| - run: python3 -m pip install -U virtualenvwrapper | |
| - run: python3 -m pip install pipenv | |
| # Download Sedona jar | |
| - env: | |
| SPARK_COMPAT: ${{ matrix.spark_compat }} | |
| run: wget https://repo1.maven.org/maven2/org/apache/sedona/sedona-spark-shaded-${SPARK_COMPAT}_2.12/1.4.1/sedona-spark-shaded-${SPARK_COMPAT}_2.12-1.4.1.jar | |
| # Put Sedona jar in place | |
| - env: | |
| SPARK_VERSION: ${{ matrix.spark }} | |
| HADOOP_VERSION: ${{ matrix.hadoop }} | |
| run: find . -name sedona-spark-shaded-*.jar -exec cp {} spark-${SPARK_VERSION}-bin-hadoop${HADOOP_VERSION}/jars/ \; | |
| # Download Geotools jar | |
| - run: wget https://repo1.maven.org/maven2/org/datasyslab/geotools-wrapper/1.4.0-28.2/geotools-wrapper-1.4.0-28.2.jar | |
| # Put Geotools jar in place | |
| - env: | |
| SPARK_VERSION: ${{ matrix.spark }} | |
| HADOOP_VERSION: ${{ matrix.hadoop }} | |
| run: find . -name geotools-wrapper-*.jar -exec cp {} spark-${SPARK_VERSION}-bin-hadoop${HADOOP_VERSION}/jars/ \; | |
| - name: Install dependencies | |
| env: | |
| SPARK_VERSION: ${{ matrix.spark }} | |
| HADOOP_VERSION: ${{ matrix.hadoop }} | |
| run: | | |
| python3 -m pip install flake8 pytest | |
| python3 -m pip install pandas | |
| python3 -m pip install numpy | |
| python3 -m pip install xarray | |
| python3 -m pip install torch torchvision torchaudio | |
| python3 -m pip install -U scikit-image>=0.19.0 | |
| python3 -m pip install cdsapi | |
| python3 -m pip install rasterio==1.1.8 | |
| python3 -m pip install petastorm | |
| python3 -m pip install matplotlib | |
| python3 -m pip install pydeck | |
| python3 -m pip install geojson | |
| python3 -m pip install pyspark==${SPARK_VERSION} | |
| python3 -m pip install apache-sedona | |
| if [ -f requirements.txt ]; then pip3 install -r requirements.txt; fi | |
| - name: Install main package | |
| run: | | |
| python3 -m pip install -e .[tests] | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| (export SPARK_HOME=$PWD/spark-${SPARK_VERSION}-bin-hadoop${HADOOP_VERSION};export PYSPARK_PYTHON=/usr/bin/python3;python3 -m pytest tests) | |
| env: | |
| SPARK_VERSION: ${{ matrix.spark }} | |
| HADOOP_VERSION: ${{ matrix.hadoop }} |