A procedure to find Fst outliers based on an inferred distribution of neutral Fst
Switch branches/tags
Nothing to show
Clone or download
Latest commit 8ec7d50 Apr 24, 2018
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
R update data Nov 28, 2017
data update data Nov 28, 2017
inst/doc update Apr 24, 2018
man update data Nov 28, 2017
vignettes update vignette Apr 24, 2018
.DS_Store update data Nov 28, 2017
.Rbuildignore tweaking format5 Jun 4, 2014
.Rhistory changed input instructions Oct 26, 2014
.gitignore installed vignette Oct 10, 2017
DESCRIPTION fix error Nov 28, 2017
NAMESPACE fix errors in compiling Nov 28, 2017
OutFLANK readme.pdf am nat reference Oct 8, 2015
OutFLANK.Rproj tweaking format5 Jun 4, 2014
README.md Update README.md Apr 24, 2018
developer_notes.txt update data Nov 28, 2017

README.md

OutFLANK v 0.2

A procedure to find Fst outliers based on an inferred distribution of neutral Fst

Version 0.2 was released in November 2017. This version fixes a bug in the OutFLANK algorithm that failed to correctly remove low heterozygosity loci when calculating neutral mean FST and df.

First, read the description of how to use OutFLANK in "OutFLANK readme.pdf" available at github.com/whitlock/OutFLANK.

After you install the package and call the library, you can view the vignette.

The vignette illustrates best practices and data checks when using the package.

The vignette can be installed by typing: browseVignettes("OutFLANK") in R

This will open a web browser, and click on the html link.

You can also view the vignette on the web at https://htmlpreview.github.io/?https://github.com/whitlock/OutFLANK/blob/master/inst/doc/OutFLANKAnalysis.html