This repository contains the markdown documents showing the scRNAseq computational analysis associated with the manuscript titled: "Neuronal CaMKK2 promotes immunosuppression and checkpoint blockade resistance in Glioblastoma".
Raw data used to construct the seurat object can be found under GEO accession GSE197879.
Details regarding how the seurat object was constructed and annotated are available here (Written by WT edited by JP)
The seurat object that was used throughout the manuscript is available under zenodo accession 6654420
Details regarding how the seurat object was used to construct the visualizations in the manuscript are available here (Written by WT edited by JP)
Details regarding how the heatmaps within the manuscript were produced are available here (Written by JP edited by WT)
Details regarding how the cell-cell communication analysis was performed are available here (Written by WT edited by JP)
.rmd files corresponding to the above markdown documents and session info can be found here