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This introduces a new option "flattenComponent". The option is similar to flattenResources, but will leave non WOComponent/EOModeld folder hierarchies intact. The resulting folder structure should be very similar to the one produced by WOLips.
Reason for this change: I have a project with many components, organised in subfolders of the Components folders. Those components must get flattened into to application Resources to be useful. But I have also a folder hierarchy in Resources and WebServerResourced, that should be copied as they are. While flattenResources will either flatten all those components and files or none, this new option flattens only components.
There is also a little bit of code cleanup, mostly warning from the compiler.