This is the wiki for the WorkflowHub project. Feel free to contribute!
This project has a Code of Conduct to ensure interactions are friendly, respectful and inclusive.
- What is WorkflowHub
- Workflow RO Crate
- How to register
- How to join a project
- How to find and retrieve workflow(s) from WorkflowHub
- How to make a workflow RO-crate
- How to register your workflow(s) in WorkflowHub
- Preview instance: https://covid19.workflowhub.eu/ (currently COVID-19-specific)
- Dev instance: https://dev.workflowhub.eu/ (use for testing; occasionally wiped)
Source: seek4science/seek branch
- Slack chat: #workflows on seek4science.slack.com (join)
- Google Drive (to request write-access, ask in Slack channel)
- Workflow Hub Introduction slides, Carole Goble 2020-03-25
Regular meeting: "Workflow Hub Club" (all welcome!)
Anyone is welcome to join the weekly Workflow Hub Club calls using Zoom.
- When: Wednesdays 10:00 GMT / 11:00 CET
- Agenda/telcon details: https://s.apache.org/workflowhub-minutes
COVID-19 BioHackathon (2020-04-05 / 2020-04-11)
This topic proposes to set up an early pre-production instance of the Workflow Hub, covid19.workflowhub.eu, to be a registry that gather the COVID-19 workflows and their metadata. Part of the tasks here is also to curate the existing workflows and help making them interoperable, reusable and reproducible.
The curated metadata will be in a FAIR format based on RO-Crate and BioSchemas annotations and maintained separate from the Workflow Hub; where possible contributed back to the workflow's origin GitHub repositories.
Anyone is welcome to join!
These planning documents are from the Workflow Hub Google Drive. Check their edit history, these may be incomplete or drafts.
- Methods of submitting to Workflow Hub
- Workflow Hub User Requirements
- Minimal Viable Product - leading to https://dev.workflowhub.eu/
- Minimum Information for the Registration of a Computational Workflow (MIRCW) lead to Workflow RO-Crate
- Workflow RO-Crate a profile of RO-Crate for exchange of workflows with WorkflowHub; based on BioSchemas Workflows profile
- Primer on standards for workflow packaging and metadata draft
- SEEK is the underlying platform used by the Workflow Hub
- RO Crate is a metadata/packaging mechanism, used by Workflow Hub for exchange of workflows
BioSchemas Workflows - a suggested new
schema.orgtype for describing computational workflows
- Common Workflow Language (CWL) is an executable workflow language, which Workflow Hub use primarily for descriptive functions