[Snyk] Security upgrade certifi from 2023.5.7 to 2024.7.4 #81
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| # This is a basic workflow to help you get started with Actions | |
| name: tests | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the master branch | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| inputs: | |
| debug_enabled: | |
| type: boolean | |
| description: Run the build with tmate debugging enabled | |
| required: false | |
| default: false | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "test" | |
| test: | |
| # The type of runner that the job will run on | |
| strategy: | |
| matrix: | |
| python-versions: ["3.11"] | |
| os: [ubuntu-20.04] | |
| runs-on: ${{ matrix.os }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - name: Checkout the repository | |
| uses: actions/checkout@v3 | |
| - name: Setup python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-versions }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install poetry tox tox-gh-actions | |
| - name: Install Singularity | |
| uses: eWaterCycle/setup-singularity@v7 | |
| with: | |
| singularity-version: 3.8.7 | |
| - name: Install Spack | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: spack/spack | |
| ref: 0707ffd4e466402bf19dff1add59eaf2b6d9154e | |
| path: spack | |
| - name: Install Spack templates | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: wtsi-hgi/softpack-templates | |
| ref: main | |
| path: templates | |
| - name: Create Spack config | |
| env: | |
| CONFIG_PATH: $HOME/.spack | |
| CONFIG_FILE: config.yaml | |
| run: | | |
| mkdir -p ${{ env.CONFIG_PATH }} | |
| cat <<EOF > ${{ env.CONFIG_PATH }}/$CONFIG_FILE | |
| config: | |
| template_dirs: | |
| - $GITHUB_WORKSPACE/templates | |
| EOF | |
| - name: Create GPG key | |
| run: | | |
| SPACK_GNUPGHOME=$HOME/.gpg $GITHUB_WORKSPACE/spack/bin/spack gpg create softpack softpack@example.com | |
| - name: Update PATH | |
| run: | | |
| echo "$GITHUB_WORKSPACE/spack/bin" >> $GITHUB_PATH | |
| - name: Run tests | |
| run: poetry run tox | |
| - name: Run code coverage | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| fail_ci_if_error: true | |
| files: coverage.xml |