bam and cram index creation changes #332
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for bam and cram index creation, use "samtools index -o <index_file>" to explicitly indicate the index file
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Should help with job retries where initial attempt left (index) files behind. |
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use "samtools index" instead of "cram_index" to create cram indexes
for bam and cram index creation, use "samtools index -o <index_file>" to explicitly indicate the index file