GitHub - wuchengyuan88/Magnus-Representation: Code for "Magnus Representation of Genome Sequences"

This is the code accompanying the paper "Magnus Representation of Genome Sequences". (https://www.biorxiv.org/content/10.1101/588582v1)

e1 to e69 are the genome sequences for the 69 filoviruses (data from GenBank).

b1 to b59 are bacterial sequences (data from GenBank).

magnusvector.py contains Python code to compute the Mean Magnus Vector of a genome sequence.

distance.py contains Python code to compute the distance matrix of genomes.

Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
README.md		README.md
b1.txt		b1.txt
b10.txt		b10.txt
b11.txt		b11.txt
b12.txt		b12.txt
b13.txt		b13.txt
b14.txt		b14.txt
b15.txt		b15.txt
b16.txt		b16.txt
b17.txt		b17.txt
b18.txt		b18.txt
b19.txt		b19.txt
b2.txt		b2.txt
b20.txt		b20.txt
b21.txt		b21.txt
b22.txt		b22.txt
b23.txt		b23.txt
b24.txt		b24.txt
b25.txt		b25.txt
b26.txt		b26.txt
b27.txt		b27.txt
b28.txt		b28.txt
b29.txt		b29.txt
b3.txt		b3.txt
b30.txt		b30.txt
b31.txt		b31.txt
b32.txt		b32.txt
b33.txt		b33.txt
b34.txt		b34.txt
b35.txt		b35.txt
b36.txt		b36.txt
b37.txt		b37.txt
b38.txt		b38.txt
b39.txt		b39.txt
b4.txt		b4.txt
b40.txt		b40.txt
b41.txt		b41.txt
b42.txt		b42.txt
b43.txt		b43.txt
b44.txt		b44.txt
b45.txt		b45.txt
b46.txt		b46.txt
b47.txt		b47.txt
b48.txt		b48.txt
b49.txt		b49.txt
b5.txt		b5.txt
b50.txt		b50.txt
b51.txt		b51.txt
b52.txt		b52.txt
b53.txt		b53.txt
b54.txt		b54.txt
b55.txt		b55.txt
b56.txt		b56.txt
b57.txt		b57.txt
b58.txt		b58.txt
b59.txt		b59.txt
b6.txt		b6.txt
b7.txt		b7.txt
b8.txt		b8.txt
b9.txt		b9.txt
distance.py		distance.py
e1.txt		e1.txt
e10.txt		e10.txt
e11.txt		e11.txt
e12.txt		e12.txt
e13.txt		e13.txt
e14.txt		e14.txt
e15.txt		e15.txt
e16.txt		e16.txt
e17.txt		e17.txt
e18.txt		e18.txt
e19.txt		e19.txt
e2.txt		e2.txt
e20.txt		e20.txt
e21.txt		e21.txt
e22.txt		e22.txt
e23.txt		e23.txt
e24.txt		e24.txt
e25.txt		e25.txt
e26.txt		e26.txt
e27.txt		e27.txt
e28.txt		e28.txt
e29.txt		e29.txt
e3.txt		e3.txt
e30.txt		e30.txt
e31.txt		e31.txt
e32.txt		e32.txt
e33.txt		e33.txt
e34.txt		e34.txt
e35.txt		e35.txt
e36.txt		e36.txt
e37.txt		e37.txt
e38.txt		e38.txt
e39.txt		e39.txt
e4.txt		e4.txt
e40.txt		e40.txt
e41.txt		e41.txt
e42.txt		e42.txt
e43.txt		e43.txt
e44.txt		e44.txt

wuchengyuan88/Magnus-Representation