Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

feature request: db admin through web gui #257

Closed
astewart-twist opened this issue Apr 8, 2016 · 4 comments
Closed

feature request: db admin through web gui #257

astewart-twist opened this issue Apr 8, 2016 · 4 comments
Labels

Comments

@astewart-twist
Copy link

It'd be really handy to be able to create new databases through the gui. Correct me if I'm wrong but it appears that the whole application has to be restarted to add new dbs?

@ar0ch
Copy link

ar0ch commented Apr 12, 2016

It does need to be restarted but you can automate the entire process. I've put the scripts I use in this gist

I use incron to watch for new files in either of the db folders I maintain (genomic and protein) and launch a makeblastdb command and restart sequenceserver on add

@yeban
Copy link
Collaborator

yeban commented Apr 30, 2016

@ar0ch That is nice! You can also use yes ^M | sequenceserver -m to recursively find all new FASTA in the database directory and create BLASTDBs. Sequence type etc will be automatically determined. Would you mind if I add this to the website?

@astewart-twist I think the admin panel should be a community contributed "extension" - I will be happy to help - including a simple but robust authentication scheme so that only admins can access the admin panel.

@yeban yeban added the feature label Apr 30, 2016
@ar0ch
Copy link

ar0ch commented Apr 30, 2016

@yeban Sure! The cut -d'/' -f7 should probably be replaced by basename for better portability

@yeban
Copy link
Collaborator

yeban commented Jan 6, 2017

There isn't much to provision in SequenceServer. An admin interface would thus be overkill. I am happy to consider the ability to automatically detect new databases though (#325).

@yeban yeban closed this as completed Jan 6, 2017
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

3 participants