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  1. CoverM Public

    Read coverage calculator for metagenomics

    Rust 159 19

  2. Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

    Python 155 30

  3. singlem Public

    De-novo OTUs from shotgun metagenomes

    Python 66 13

  4. Strain resolver for metagenomics

    Rust 53 8

  5. galah Public

    More scalable dereplication for metagenome assembled genomes

    Rust 31 9

  6. A hybrid assembly and MAG recovery pipeline (and more!)

    Python 32 7

468 contributions in the last year

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Contribution activity

November 2022

Created an issue in motu-tool/mOTUs that received 2 comments

Possible to cache DB?

Hi, I'm attempting to benchmark some different profilers, and as part of this, I'm copying the database (and reads) to local disk, so that the proc…


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