merged merge

.travis.yml

@@ -3,7 +3,6 @@ dist: bionic
 language: python
 python:
   - "3.7"
-# command to install dependencies
 services:
   - docker
 before_install:
@@ -19,7 +18,6 @@ install:
   - pip install pytest
   - pip install pytest-cov
   - pip install coveralls
-# command to run tests
 script:
   - PYTHONPATH=./ pytest ./test --cov=./photonai
 after_success:

test/basic_svm_pipe_results_2020-07-13_10-23-34/best_config_predictions.csv

@@ -0,0 +1,285 @@
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test/basic_svm_pipe_results_2020-07-13_10-23-34/hyperpipe_config.json

@@ -0,0 +1,90 @@
+{
+    "name": "basic_svm_pipe",
+    "verbosity": 1,
+    "permutation_id": null,
+    "cache_folder": null,
+    "nr_of_processes": 1,
+    "random_seed": 42,
+    "inner_cv": {
+        "n_splits": 3,
+        "shuffle": false,
+        "__photon_type": "KFold"
+    },
+    "outer_cv": {
+        "n_splits": 2,
+        "shuffle": false,
+        "__photon_type": "KFold"
+    },
+    "calculate_metrics_across_folds": false,
+    "eval_final_performance": false,
+    "test_size": 0.2,
+    "calculate_metrics_per_fold": true,
+    "performance_constraints": null,
+    "optimizer": "grid_search",
+    "metrics": [
+        "accuracy",
+        "precision",
+        "recall",
+        "balanced_accuracy"
+    ],
+    "best_config_metric": "accuracy",
+    "output_settings": {
+        "mongodb_connect_url": null,
+        "save_output": true,
+        "plots": true,
+        "overwrite_results": false,
+        "project_folder": "/home/rl/Git/photonai/test",
+        "user_id": "",
+        "wizard_object_id": "",
+        "wizard_project_name": "",
+        "__photon_type": "OutputSettings"
+    },
+    "preprocessing": {
+        "elements": [
+            {
+                "initial_name": "LabelEncoder",
+                "test_disabled": false,
+                "__photon_type": "PipelineElement"
+            }
+        ],
+        "__photon_type": "Preprocessing"
+    },
+    "elements": [
+        {
+            "initial_name": "StandardScaler",
+            "test_disabled": false,
+            "__photon_type": "PipelineElement"
+        },
+        {
+            "initial_hyperparameters": {
+                "n_components": {
+                    "range_type": "range",
+                    "start": 10,
+                    "stop": 12,
+                    "__photon_type": "IntegerRange"
+                }
+            },
+            "initial_name": "PCA",
+            "test_disabled": true,
+            "__photon_type": "PipelineElement"
+        },
+        {
+            "initial_hyperparameters": {
+                "kernel": {
+                    "values": [
+                        "rbf",
+                        "linear"
+                    ],
+                    "__photon_type": "Categorical"
+                }
+            },
+            "initial_name": "SVC",
+            "kwargs": {
+                "C": 2,
+                "gamma": "scale"
+            },
+            "test_disabled": false,
+            "__photon_type": "PipelineElement"
+        }
+    ]
+}