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Merge Develop to master with PHOTONAI v2.1.0 #30

Merged
merged 144 commits into from
Mar 3, 2021
Merged

Merge Develop to master with PHOTONAI v2.1.0 #30

merged 144 commits into from
Mar 3, 2021

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ksarink
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@ksarink ksarink commented Mar 3, 2021

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lucasplagwitz and others added 30 commits August 17, 2020 12:15
@lucasplagwitz
raise warning -> warnings.warn, add BooleanSwitch to bayesian optimiz…
16efbed 
…er, add optimization tests
@lucasplagwitz
remove a code smell, add BaseShuffleSplit and _RepeatedSplits to Hype…
49659d6 
…rpipe.inner_fold types
@lucasplagwitz
enable logspace in optimizer SMAC
2961e8e
@RLeenings
Merge pull request #19 from wwu-mmll/feature/warning_handling_and_opt…
52eda62 
…imization_adjustments

Handle of warnings and optimization adjustments
@lucasplagwitz
integration of nevergrad optimizers
28e69cd
@lucasplagwitz
updated keras examples
f3a0110
@RLeenings
adapt callback test
130cea1
@lucasplagwitz
count warnings -> content based warnings testing, improve cnn example
a0d00b1
@lucasplagwitz
remove folds probabilities, unset scikit-learn version, update cnn ex…
cbd27fb 
…ample, pep8 adjustments
@lucasplagwitz
adaptions for optimization tests, keras wrapper and rename save_memor…
a93cb89 
…y -> decrease_memory
@lucasplagwitz
add example for nevergrad and some comments+typing
3d2686c
@lucasplagwitz
increase skopt runs 10 -> 25
cd5ddb3
@lucasplagwitz
cnn example: build model in fit
d40d8f7
@lucasplagwitz
remove reload_weights, small pep8s
46d1e9e
@lucasplagwitz
small adjustment for learning curve plot for seaborn version >= 0.11
d2947a2
@lucasplagwitz
add xlrd to dependencies
71f70ab
@ksarink
change random_seed type hint to int and default value (no seed) to None
64230fa
@lucasplagwitz
allow estimator_type in [None, 'transformer'] for PipelineElement wit…
5d38769 
…hout predict method
@lucasplagwitz
replace dot in float labels for mongoDB
4d8497d
@lucasplagwitz
hotfix - remove typingwith nevergrad prerequisite
ded13c3
@RLeenings
handle missing computation_end_time
7e48875
@RLeenings
save missing time in perm test with timedelta
c2e56e9
@lucasplagwitz
disable multiprocessing for preprocessing elements in optimum_pipe
0a77ea8
@RLeenings
added mkdocs theme
c6b6973
@RLeenings
Merge branch 'develop' into feature/add_nevergrad_support
b9d7fef
@RLeenings
Merge pull request #20 from wwu-mmll/feature/add_nevergrad_support
5b760ad 
Nevergrad support
@lucasplagwitz
test: minor adjustments related to scikit-learn==0.24
3beb721
@lucasplagwitz
add pyDOE to smac/requirements
f2055fe
@lucasplagwitz
update docstrings in processing/*
10d6fe6
@lucasplagwitz
temporary version clip for dask/distribution for parallel permutation…
2bee476 
… tests
RLeenings and others added 28 commits February 18, 2021 14:39
@RLeenings
adapted custom metric
f358fb4
@RLeenings
Merge branch 'feature/doc_adjustments' of github.com:wwu-mmll/photona…
d21c00f 
…i into feature/doc_adjustments
@RLeenings
adapt custom metric
e2e2030
@RLeenings
adapt to new imbalanced learn version
962aa2a
@RLeenings
highlighted feature importance script
a1c898b
@RLeenings
adapted index example
c0d3067
@lucasplagwitz
docs: preprocessing
cb4c025
@lucasplagwitz
smaller changes
6acdcd2
@lucasplagwitz
remove TimeBoxed optimization
1f634d0
@lucasplagwitz
add repr -> avoid jupyter bug
fe83f3e
@lucasplagwitz
refresh example/custom_metric
520592b
@lucasplagwitz
docs: add api/keras + imblearn
5b53355
@lucasplagwitz
tests: decrease verbosity
d88160a
@RLeenings
add results handler example, preprocessing example, renamed items in …
b10d2fc 
…menu
@RLeenings
debug compare_estimators example
1f99f6d
@lucasplagwitz
small typos
f608ab4
@NilsWinter
Add additional explanations to architectures and add structure to the…
3e362e0 
… examples
@RLeenings
change examples to regression
d586a80
@RLeenings
changed link highlights to photonai colors
6d2af7c
@lucasplagwitz
skopt: add timebound
09b4c3a
@lucasplagwitz
docs/api upgrade
dc4a085
@lucasplagwitz
add some tests, **kwargs parameter
9d621bc
@NilsWinter
Update commit badge
784461b 
Change from monthly to yearly
@NilsWinter
Fix typo
04428c0
@RLeenings
Merge pull request #28 from wwu-mmll/feature/some_adaptions
3386d47 
Minor adaptations
@ksarink
Move to GitHub actions (from TravisCI) (#29)
ce2f034 
* move to github-actions
@RLeenings
deprecation warning for eval-final-performance and increased version …
e7f01bd 
…number
@ksarink
add deployment step to GitHub actions
0ac81f9
@sonarcloud
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sonarcloud bot commented Mar 3, 2021

SonarCloud Quality Gate failed.

Bug E 4 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 110 Code Smells

No Coverage information No Coverage information
0.5% 0.5% Duplication

@ksarink ksarink merged commit d1e08a8 into master Mar 3, 2021
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6 participants
@ksarink @lucasplagwitz @RLeenings @julblanke @LeonKV @NilsWinter