fix: bump new release for JOSS (#143)

Co-authored-by: Sam Levang <slevang@salientpredictions.com>
xarray-contrib · Dec 23, 2023 · c3e4780 · c3e4780
1 parent 48e63a0
commit c3e4780
Show file tree

Hide file tree

Showing 8 changed files with 580 additions and 580 deletions.
diff --git a/.github/workflows/changelog.yml b/.github/workflows/changelog.yml
@@ -13,7 +13,7 @@ jobs:
         fetch-depth: 0
     - uses: BobAnkh/auto-generate-changelog@v1.2.5
       with:
-        REPO_NAME: 'nicrie/xeofs'
+        REPO_NAME: 'xarray-contrib/xeofs'
         ACCESS_TOKEN: ${{ secrets.CHANGELOG_TOKEN }}
         PATH: 'CHANGELOG.md'
         COMMIT_MESSAGE: 'docs(CHANGELOG): update release notes'

diff --git a/CHANGELOG.md b/CHANGELOG.md
diff --git a/README.md b/README.md
@@ -2,10 +2,10 @@
 
 | Versions                   | ![PyPI](https://img.shields.io/pypi/v/xeofs) ![Conda](https://img.shields.io/conda/vn/conda-forge/xeofs) |
 |----------------------------|:---------------------------------------------------------------------------------------------:|
-| Build & Testing            | ![Build](https://img.shields.io/github/actions/workflow/status/nicrie/xeofs/ci.yml?branch=main) ![Coverage](https://codecov.io/gh/nicrie/xeofs/branch/main/graph/badge.svg?token=8040ZDH6U7) |
+| Build & Testing            | ![Build](https://img.shields.io/github/actions/workflow/status/xarray-contrib/xeofs/ci.yml?branch=main) ![Coverage](https://codecov.io/gh/xarray-contrib/xeofs/branch/main/graph/badge.svg?token=8040ZDH6U7) |
 | Code Quality               | ![Black](https://img.shields.io/badge/code%20style-black-000000.svg)                           |
 | Documentation              | ![Docs](https://readthedocs.org/projects/xeofs/badge/?version=latest)                          |
-| Citation & Licensing       | ![Zenodo](https://zenodo.org/badge/DOI/10.5281/zenodo.6323012.svg) ![License](https://img.shields.io/pypi/l/xeofs) |
+| Citation & Licensing       | [![JOSS](https://joss.theoj.org/papers/4f50349ee1777b8a61761183047b1180/status.svg)](https://joss.theoj.org/papers/4f50349ee1777b8a61761183047b1180) ![Zenodo](https://zenodo.org/badge/DOI/10.5281/zenodo.6323012.svg) ![License](https://img.shields.io/pypi/l/xeofs) |
 | User Engagement            | ![Downloads](https://img.shields.io/pypi/dw/xeofs)                                          |
 
 ## Overview
@@ -123,11 +123,11 @@ Contributions are highly welcomed and appreciated. If you're interested in impro
 
 ## License
 
-This project is licensed under the terms of the [MIT license](https://github.com/nicrie/xeofs/blob/main/LICENSE).
+This project is licensed under the terms of the [MIT license](https://github.com/xarray-contrib/xeofs/blob/main/LICENSE).
 
 ## Contact
 
-For questions or support, please open a [Github issue](https://github.com/nicrie/xeofs/issues).
+For questions or support, please open a [Github issue](https://github.com/xarray-contrib/xeofs/issues).
 
 ## Credits
 
@@ -144,7 +144,7 @@ When using `xeofs`, kindly remember to cite the original references of the metho
 ```bibtex
 @software{rieger_xeofs_2023,
 title = {xeofs: Comprehensive EOF analysis in Python with xarray: A versatile, multidimensional, and scalable tool for advanced climate data analysis},
-url = {https://github.com/nicrie/xeofs}
+url = {https://github.com/xarray-contrib/xeofs}
 version = {x.y.z},
 author = {Rieger, N. and Levang, S. J.},
 date = {2023},
@@ -153,4 +153,4 @@ doi = {10.5281/zenodo.6323011}
 
 ## Contributors
 
-[![Contributors](https://contrib.rocks/image?repo=nicrie/xeofs)](https://github.com/nicrie/xeofs/graphs/contributors)
+[![Contributors](https://contrib.rocks/image?repo=xarray-contrib/xeofs)](https://github.com/xarray-contrib/xeofs/graphs/contributors)
diff --git a/docs/conf.py b/docs/conf.py
@@ -124,7 +124,7 @@
             # Label for this link
             "name": "GitHub",
             # URL where the link will redirect
-            "url": "https://github.com/nicrie/xeofs",  # required
+            "url": "https://github.com/xarray-contrib/xeofs",  # required
             # Icon class (if "type": "fontawesome"), or path to local image (if "type": "local")
             "icon": "fa-brands fa-square-github",
             # The type of image to be used (see below for details)

diff --git a/docs/overview_2_features.rst b/docs/overview_2_features.rst
@@ -193,7 +193,7 @@ significant speed advantages. The dashed line marks data sets with about 3 MiB;
     You can find the script to run the performance tests here_.
 
 
-.. _here: https://github.com/nicrie/xeofs/tree/main/docs/perf
+.. _here: https://github.com/xarray-contrib/xeofs/tree/main/docs/perf
 
 Implement Your Own Model
 -------------------------
@@ -392,5 +392,5 @@ toolkit for dimensionality reduction techniques.
 .. _xMCA: https://github.com/Yefee/xMCA
 .. _eofs: https://github.com/ajdawson/eofs
 .. _`sklearn documentation on PCA`: https://scikit-learn.org/stable/modules/generated/sklearn.decomposition.PCA.html
-.. _`GitHub`: https://github.com/nicrie/xeofs/issues
+.. _`GitHub`: https://github.com/xarray-contrib/xeofs/issues
 
diff --git a/docs/overview_3_contributing.rst b/docs/overview_3_contributing.rst
@@ -35,7 +35,7 @@ Next, clone your fork to your computer:
 
     git clone https://github.com/your-user-name/xeofs.git
     cd xeofs
-    git remote add upstream https://github.com/nicrie/xeofs.git
+    git remote add upstream https://github.com/xarray-contrib/xeofs.git
 
 This command sequence creates a local directory named *xeofs* and links your version to the primary xeofs project.
 

diff --git a/pyproject.toml b/pyproject.toml
@@ -2,11 +2,11 @@
 name = "xeofs"
 version = "2.2.3"
 description = "Comprehensive EOF analysis in Python with xarray: A versatile, multidimensional, and scalable tool for advanced climate data analysis"
-authors = ["Niclas Rieger <niclasrieger@gmail.com>"]
+authors = ["Niclas Rieger <niclasrieger@gmail.com>", "Samuel J. Levang <slevang@gmail.com>"]
 license = "MIT"
 readme = "README.md"
-homepage = "https://github.com/nicrie/xeofs"
-repository = "https://github.com/nicrie/xeofs"
+homepage = "https://github.com/xarray-contrib/xeofs"
+repository = "https://github.com/xarray-contrib/xeofs"
 documentation = "https://xeofs.readthedocs.io/en/latest/"
 
 [tool.poetry.dependencies]

diff --git a/xeofs/models/decomposer.py b/xeofs/models/decomposer.py
@@ -209,7 +209,7 @@ def _svd(self, X, dims, func, kwargs):
             raise np.linalg.LinAlgError(
                 "SVD failed. This may be due to isolated NaN values in the data. Please consider the following steps:\n"
                 "1. Check for and remove any isolated NaNs in your dataset.\n"
-                "2. If the error persists, please raise an issue at https://github.com/nicrie/xeofs/issues."
+                "2. If the error persists, please raise an issue at https://github.com/xarray-contrib/xeofs/issues."
             )
 
     def _compute_svd_result(self, U, s, VT):