Skip to content

HTTPS clone URL

Subversion checkout URL

You can clone with HTTPS or Subversion.

Download ZIP
Biological data format reader for Scala
Scala Shell
branch: develop

This branch is 56 commits behind utgenome:develop

Fetching latest commit…

Cannot retrieve the latest commit at this time

Failed to load latest commit information.
bin
project
src
.gitignore
README.md
version.sbt

README.md

Glens

Glens is a Scala library for reading and writing genomic data files.

Feature

  • Object definitions for biological data formats
  • Mapping data files into objects

Supported Formats

  • FASTA
  • FASTQ
  • BED
  • WIG

ToDo

  • Add format support
    • GFF
    • SAM/BAM (using picard)
    • AXT
    • bigWig/bigBED
    • Silk
  • Data storage
    • compressed storage
    • split for parallel read/write
  • Synchronization
Something went wrong with that request. Please try again.