Biological data format reader for Scala
Scala Shell
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README.md

Glens

Glens is a Scala library for reading and writing genomic data files.

Feature

  • Object definitions for biological data formats
  • Mapping data files into objects

Supported Formats

  • FASTA
  • FASTQ
  • BED
  • WIG

ToDo

  • Add format support
    • GFF
    • SAM/BAM (using picard)
    • AXT
    • bigWig/bigBED
    • Silk
  • Data storage
    • compressed storage
    • split for parallel read/write
  • Synchronization