A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.
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README.md

cookiecutter-snakemake-analysis-pipeline

A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.

A Cookiecutter template for a Snakemake pipeline.

Features

  • makes creating new Snakemake pipelines easy and standardized.

Quickstart

Generate a new Snakemake pipeline:

$ cookiecutter https://github.com/xguse/cookiecutter-snakemake-analysis-pipeline.git

Fork This / Create Your Own

If you have differences in your preferred setup, I encourage you to fork this to create your own version. If you do, consider submitting a pull request to share the love.