rename EM_est_param to fit_EM, and add test for est_param #22
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
on: | |
push: | |
branches: [main, master, multigroup_test] | |
pull_request: | |
branches: [main, master, multigroup_test] | |
name: R-CMD-check | |
jobs: | |
R-CMD-check: | |
runs-on: macos-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
R_KEEP_PKG_SOURCE: yes | |
_R_CHECK_FORCE_SUGGESTS_: false | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
use-public-rspm: true | |
- name: Install dependencies | |
run: | | |
install.packages(c("logging","mixsqp","rlang")) | |
install.packages(c("magrittr","tibble","dplyr","ggplot2","cowplot")) | |
install.packages(c("ggrepel","readr","data.table")) | |
install.packages(c("RSQLite","locuszoomr","pgenlibr","Rfast")) | |
install.packages(c("knitr","rmarkdown","testthat","BiocManager")) | |
install.packages(c("crayon","rcmdcheck")) | |
BiocManager::install("GenomeInfoDb",ask = FALSE) | |
BiocManager::install("ensembldb",ask = FALSE) | |
BiocManager::install("AnnotationFilter",ask = FALSE) | |
BiocManager::install("EnsDb.Hsapiens.v86",ask = FALSE) | |
shell: Rscript {0} | |
- name: Check | |
run: | | |
options(crayon.enabled = TRUE) | |
rcmdcheck::rcmdcheck(args = c("--no-manual","--ignore-vignettes"), | |
error_on = "error", | |
build_args = "--no-build-vignettes") | |
shell: Rscript {0} | |