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Updated the github and circleci configs.
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pcarbo committed Jun 14, 2024
1 parent e76693e commit 2dbb148
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Showing 3 changed files with 4 additions and 3 deletions.
2 changes: 1 addition & 1 deletion .circleci/config.yml
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Expand Up @@ -19,7 +19,7 @@ jobs:
command: |
mkdir -p ~/R/Library
Rscript -e 'install.packages(c("doParallel","foreach","logging","mixsqp","magrittr","tibble","dplyr","ggplot2","cowplot","ggrepel","readr","data.table","R.utils","RSQLite","locuszoomr","pgenlibr","Rfast","knitr","rmarkdown","testthat","BiocManager"))'
Rscript -e 'BiocManager::install(c("GenomicRanges","ensembldb","AnnotationFilter"))'
Rscript -e 'BiocManager::install(c("GenomicRanges","ensembldb","AnnotationFilter","EnsDb.Hsapiens.v86"))'
- run:
name: Session information and installed package versions
command: |
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1 change: 1 addition & 0 deletions .github/workflows/R-CMD-check.yaml
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Expand Up @@ -30,6 +30,7 @@ jobs:
install.packages(c("crayon","rcmdcheck"))
BiocManager::install("ensembldb")
BiocManager::install("AnnotationFilter")
BiocManager::install("EnsDb.Hsapiens.v86")
shell: Rscript {0}
- name: Check
run: |
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4 changes: 2 additions & 2 deletions DESCRIPTION
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Expand Up @@ -3,8 +3,8 @@ Package: ctwas
Type: Package
Title: Adjusting for Genetic Confounders in Transcriptome-Wide Association
Studies Improves Discovery of Risk Genes of Complex Traits
Date: 2024-06-13
Version: 0.2.38
Date: 2024-06-14
Version: 0.2.39
Authors@R: c(person("Siming","Zhao",role="aut",email="siming.zhao06@gmail.com"),
person("Wesley","Crouse",role="aut"),
person("Sheng","Qian",role="aut",email="shengqian@uchicago.edu"),
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