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KITS19 training and inference pipeline

(Note that code and this instruction are in draft state due to rush with the competition, to be refactored)

  • setup SparseConvNet framework as described in [https://github.com/facebookresearch/SparseConvNet#setup]
  • get train/val/test data for kits19 at [https://github.com/neheller/kits19] and put into corresponding root repo folders
  • copy the code from this repo into SparseConvNet/examples/ScanNet/ folder:
    • convert.py - data format convert utils
    • data.py - config parameters for train and inference
    • infer.py - main for the inference code
    • unet.py - main for training code
    • validate.py - main for validation
    • visualize.py - main for exporting png images from the CT scan

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