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The first version of the SPL knee atlas.
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@haehn
haehn committed Jan 5, 2012
1 parent 02d7abd commit 305c2ec
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28 changes: 28 additions & 0 deletions .gitignore
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#SVN
*.svn

#Python
*.pyc

# project from Eclipse/Aptana IDE
*.project
*.pydevproject
*.settings

#OSX specifics
*.DS_Store

# temp files
.temp_*
temp*

# all doc files
#*/doc/*

# all build files
*-build/*
*-deps.js

# all .log files
*.log

311 changes: 311 additions & 0 deletions knee_atlas/index.html
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<html>
<head>
<title>The SPL Knee Atlas</title>

<script type="text/javascript" src="../xtk.js"></script>

<script type="text/javascript">

var run = function() {

var r = new X.renderer('r');
r.init();

//
// bones
//
var bones = new X.object();

var femur = new X.object();
femur.load('Model_95_femur.vtk');

var tibia = new X.object();
tibia.load('Model_96_tibia.vtk');

var fibula = new X.object();
fibula.load('Model_97_fibula.vtk');

var patella = new X.object();
patella.load('Model_98_patella.vtk');


bones.children().push(femur);
bones.children().push(tibia);
bones.children().push(fibula);
bones.children().push(patella);
bones.setColor(1,1,1);

//
// cartilages
//
var cartilages = new X.object();

var femoral_cartilage = new X.object();
femoral_cartilage.load('Model_83_femoral_cartilage.vtk');

var lateral_tibial_cartilage = new X.object();
lateral_tibial_cartilage.load('Model_84_lateral_tibial_cartilage.vtk');

var medial_tibial_cartilage = new X.object();
medial_tibial_cartilage.load('Model_85_medial_tibial_cartilage.vtk');

var patellar_cartilage = new X.object();
patellar_cartilage.load('Model_86_patellar_cartilage.vtk');

cartilages.children().push(femoral_cartilage);
cartilages.children().push(lateral_tibial_cartilage);
cartilages.children().push(medial_tibial_cartilage);
cartilages.children().push(patellar_cartilage);
cartilages.setColor(0.43,0.71,0.82);

//
// meniscus
//
var meniscus = new X.object();

var lateral_meniscus = new X.object();
lateral_meniscus.load('Model_81_lateral_meniscus.vtk');

var medial_meniscus = new X.object();
medial_meniscus.load('Model_82_medial_meniscus.vtk');

meniscus.children().push(lateral_meniscus);
meniscus.children().push(medial_meniscus);
meniscus.setColor(0.7,0.7,0.7);

//
// vascular system
//
var vascular_system = new X.object();

//
// arteries
var arteries = new X.object();

var popliteal_artery = new X.object();
popliteal_artery.load('Model_71_popliteal_artery.vtk');

var superior_medial_genicular_artery = new X.object();
superior_medial_genicular_artery.load('Model_73_superior_medial_genicular_artery.vtk');

var superior_lateral_genicular_artery = new X.object();
superior_lateral_genicular_artery.load('Model_74_superior_lateral_genicular_artery.vtk');

var middle_genicular_artery = new X.object();
middle_genicular_artery.load('Model_75_middle_genicular_artery.vtk');

arteries.children().push(popliteal_artery);
arteries.children().push(superior_medial_genicular_artery);
arteries.children().push(superior_lateral_genicular_artery);
arteries.children().push(middle_genicular_artery);
arteries.setColor(1,0,0);

//
// veins
var veins = new X.object();

var popliteal_vein = new X.object();
popliteal_vein.load('Model_72_popliteal_vein.vtk');

var great_saphenous_vein = new X.object();
great_saphenous_vein.load('Model_77_great_saphenous_vein.vtk');

var small_saphenous_vein = new X.object();
small_saphenous_vein.load('Model_78_small_saphenous_vein.vtk');

veins.children().push(popliteal_vein);
veins.children().push(great_saphenous_vein);
veins.children().push(small_saphenous_vein);
veins.setColor(0,0,1);

vascular_system.children().push(arteries);
vascular_system.children().push(veins);

//
// nerves
//
var nerves = new X.object();

var peroneus_nerve = new X.object();
peroneus_nerve.load('Model_61_peroneus_nerve.vtk');

var tibialis_nerve = new X.object();
tibialis_nerve.load('Model_62_tibialis_nerve.vtk');

var muscular_branches_tibialis_nerve = new X.object();
muscular_branches_tibialis_nerve.load('Model_63_muscular_branches_tibialis_nerve.vtk');

var medial_sural_cutaneous_nerve = new X.object();
medial_sural_cutaneous_nerve.load('Model_64_medial_sural_cutaneous_nerve.vtk');

nerves.children().push(peroneus_nerve);
nerves.children().push(tibialis_nerve);
nerves.children().push(muscular_branches_tibialis_nerve);
nerves.children().push(medial_sural_cutaneous_nerve);
nerves.setColor(1,1,0);

//
// tendons
//
var tendons = new X.object();

var adductor_magnus_tendon = new X.object();
adductor_magnus_tendon.load('Model_41_adductor_magnus_tendon.vtk');

var biceps_femoris_tendon = new X.object();
biceps_femoris_tendon.load('Model_42_biceps_femoris_tendon.vtk');

var iliotibial_tract = new X.object();
iliotibial_tract.load('Model_43_iliotibial_tract.vtk');

var popliteus_tendon = new X.object();
popliteus_tendon.load('Model_44_popliteus_tendon.vtk');

var soleus_tendon = new X.object();
soleus_tendon.load('Model_46_soleus_tendon.vtk');

var semitendinosus_tendon = new X.object();
semitendinosus_tendon.load('Model_47_semitendinosus_tendon.vtk');

var gracilis_tendon = new X.object();
gracilis_tendon.load('Model_48_gracilis_tendon.vtk');

tendons.children().push(adductor_magnus_tendon);
tendons.children().push(biceps_femoris_tendon);
tendons.children().push(iliotibial_tract);
tendons.children().push(popliteus_tendon);
tendons.children().push(soleus_tendon);
tendons.children().push(semitendinosus_tendon);
tendons.children().push(gracilis_tendon);
tendons.setColor(0.93,0.85,0.85);

//
// muscles
//
var muscles = new X.object();

var vastus_lateralis_muscle = new X.object();
vastus_lateralis_muscle.load('Model_12_vastus_lateralis_muscle.vtk');

var vastus_medialis_muscle = new X.object();
vastus_medialis_muscle.load('Model_13_vastus_medialis_muscle.vtk');

var biceps_femoris_muscle = new X.object();
biceps_femoris_muscle.load('Model_15_biceps_femoris_muscle.vtk');

var semimembranosus_muscle = new X.object();
semimembranosus_muscle.load('Model_16_semimembranosus_muscle.vtk');

var semitendinosus_muscle = new X.object();
semitendinosus_muscle.load('Model_17_semitendinosus_muscle.vtk');

var gracilis_muscle = new X.object();
gracilis_muscle.load('Model_18_gracilis_muscle.vtk');

var sartorius_muscle = new X.object();
sartorius_muscle.load('Model_19_sartorius_muscle.vtk');

var medial_head_gastrocnemius_muscle = new X.object();
medial_head_gastrocnemius_muscle.load('Model_20_medial_head_gastrocnemius_muscle.vtk');

var lateral_head_gastrocnemius_muscle = new X.object();
lateral_head_gastrocnemius_muscle.load('Model_21_lateral_head_gastrocnemius_muscle.vtk');

var popliteus_muscle = new X.object();
popliteus_muscle.load('Model_22_popliteus_muscle.vtk');

var soleus_muscle = new X.object();
soleus_muscle.load('Model_23_soleus_muscle.vtk');

var tibialis_anterior_muscle = new X.object();
tibialis_anterior_muscle.load('Model_24_tibialis_anterior_muscle.vtk');

var extensor_digitorum_longus_muscle = new X.object();
extensor_digitorum_longus_muscle.load('Model_25_extensor_digitorum_longus_muscle.vtk');

var peroneus_longus_muscle = new X.object();
peroneus_longus_muscle.load('Model_26_peroneus_longus_muscle.vtk');

muscles.children().push(vastus_lateralis_muscle);
muscles.children().push(vastus_medialis_muscle);
muscles.children().push(biceps_femoris_muscle);
muscles.children().push(semimembranosus_muscle);
muscles.children().push(semitendinosus_muscle);
muscles.children().push(gracilis_muscle);
muscles.children().push(sartorius_muscle);
muscles.children().push(medial_head_gastrocnemius_muscle);
muscles.children().push(lateral_head_gastrocnemius_muscle);
muscles.children().push(popliteus_muscle);
muscles.children().push(soleus_muscle);
muscles.children().push(tibialis_anterior_muscle);
muscles.children().push(extensor_digitorum_longus_muscle);
muscles.children().push(peroneus_longus_muscle);
muscles.setColor(0.89,0.48,0.48);

//
// ligaments
//
var ligaments = new X.object();

var anterior_cruciate_ligament = new X.object();
anterior_cruciate_ligament.load('Model_31_anterior_cruciate_ligament.vtk');

var posterior_cruciate_ligament = new X.object();
posterior_cruciate_ligament.load('Model_32_posterior_cruciate_ligament.vtk');

var fibular_collateral_ligament = new X.object();
fibular_collateral_ligament.load('Model_33_fibular_collateral_ligament.vtk');

var tibial_collateral_ligament = new X.object();
tibial_collateral_ligament.load('Model_34_tibial_collateral_ligament.vtk');

var patellar_ligament = new X.object();
patellar_ligament.load('Model_35_patellar_ligament.vtk');

ligaments.children().push(anterior_cruciate_ligament);
ligaments.children().push(posterior_cruciate_ligament);
ligaments.children().push(fibular_collateral_ligament);
ligaments.children().push(tibial_collateral_ligament);
ligaments.children().push(patellar_ligament);
ligaments.setColor(0.8,0.8,0.8);

//
// fat
//
var fat = new X.object();

var infrapatellar_fat_body = new X.object();
infrapatellar_fat_body.load('Model_9_infrapatellar_fat_body.vtk');

fat.children().push(infrapatellar_fat_body);
fat.setColor(0.87,0.89,0.58);

//
// Add all knee components to the renderer
//
r.add(bones);
r.add(cartilages);
r.add(meniscus);
r.add(vascular_system);
r.add(nerves);
r.add(tendons);
r.add(muscles);
r.add(ligaments);
r.add(fat);

// position the camera for a nice view and set the up-vector for correct orientation
r.camera().setUp(0, 0, 1);
r.camera().setPosition(-300,0,0);

// .. curtain up!!
r.render();

};
</script>

</head>

<body onload="run()">
<div id='r' style='background-color: #000000; width: 100%; height: 100%;'></div>
</body>
</html>

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