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Tool for quantify morphological trait of budding yeast (fork version maintained by Chang)

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SCMDUtils

fork version of CalMolph maintained by Chang


How to build?

cd $PROJECT_PATH
make

How to use?

cd $PROJECT_PATH
java -jar ./target/CalMolph-2.0.3.jar -i ./test/zzz -o ./test/out -x ./test/xml -v

parameters

name description
i input photo directory
o output directory of the analysis results
x output directory of the point coordinates
n specify the strain name
s specify the suffix of image file
a actin mode, opt: [true / false], default true
d DAPI mode, opt: [true / false], default true

Update

  • change ant build to maven
  • fix SJIS encoding to UTF-8
  • replace log4j 1.x with 2.13

TODO

  • make the Japanese annotation in to English

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Tool for quantify morphological trait of budding yeast (fork version maintained by Chang)

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