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ponnhide committed Apr 13, 2018
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Showing 23 changed files with 77,608 additions and 0 deletions.
1,148 changes: 1,148 additions & 0 deletions SPADE.py

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70,659 changes: 70,659 additions & 0 deletions example/GCF_000014485.1_ASM1448v1_genomic.gbff

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34 changes: 34 additions & 0 deletions example/NC_008532.1/nucl_649122_650215/align.unit_seq.fasta
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>motif_1002
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1067
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1133
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1199
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1265
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1331
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1397
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1463
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1530
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1596
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1662
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1729
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1795
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1861
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1927
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_1993
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
>motif_2059
GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
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19 changes: 19 additions & 0 deletions example/NC_008532.1/nucl_649122_650215/blast.txt
@@ -0,0 +1,19 @@
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1003 1038 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1068 1103 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1134 1169 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1200 1235 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1266 1301 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1332 1367 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1398 1433 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1464 1499 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1531 1566 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1597 1632 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1663 1698 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1730 1765 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1796 1831 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1862 1897 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1928 1963 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC 100.000 36 36 0 0 1 36 1994 2029 0 7.54e-17 69.9
query GTTTTTGTACTCTCAAGATTTAAGTAACTGTACA subject GTTTTTGTACTCTCAAGATTTAAGTAACTGTACA 100.000 36 34 0 0 1 34 2060 2093 0 1.08e-15 66.1
query TTAAGTA subject TTAAGTA 100.000 36 7 0 0 20 26 41 47 0 4.6 14.1
query TTGTACT subject TTGTACT 100.000 36 7 0 0 5 11 2507 2513 0 4.6 14.1

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