nussinov

Python implementation of Nussinov algorithm for RNA folding

Instalation

git clone git@github.com:yakxxx/nussinov.git nussinov
sudo apt-get install virtualenv
virtualenv env
source env/bin/activate
pip install -r requirements.txt

Tests

source env/bin/activate
python tests.py

Coverage

source env/bin/activate
coverage run tests.py
coverage report

Runing

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Links

http://en.wikipedia.org/wiki/Nucleic_acid_secondary_structure

http://mendel.informatics.indiana.edu/~yye/lab/teaching/getfile.php?what=lecture&name=I519-rnafolding1.pdf

http://narnia.cs.ttu.edu/drupal/node/123

http://ultrastudio.org/en/Nussinov_algorithm