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SURF_scripts

Scripts used for 16S processing and R data analysis

Scripts for sequence processing and R analysis of 16S ribosomal RNA (rRNA) transcripts from : 1) dehumidifier fluid (as a potential contaminant) (2 L), 2) DUSEL 3A fluid (2 L), 3) electrode-attached biofilms in ISEC (3 x 4 cm), 4) electrode-attached biofilms of the laboratory electrochemical enrichments (1 x 0.5 cm), and 5) abiotic control.

  1. Batch file (MOTHUR) for extracting bacterial sequences
  2. Batch file (MOTHUR) for extracting archaeal sequences
  3. Taxonomy file from MOTHUR
  4. Shared file from MOTHUR
  5. Metadata file for downnstream analysis
  6. Folder with figure2 data and R script
  7. Folder with figure3 data and R script
  8. Folder with figure6 data and R script
  9. Folder with figure7 data and R script

Paper is found here [https://www.frontiersin.org/articles/10.3389/fenrg.2019.00121/full].