Scripts used for 16S processing and R data analysis
Scripts for sequence processing and R analysis of 16S ribosomal RNA (rRNA) transcripts from : 1) dehumidifier fluid (as a potential contaminant) (2 L), 2) DUSEL 3A fluid (2 L), 3) electrode-attached biofilms in ISEC (3 x 4 cm), 4) electrode-attached biofilms of the laboratory electrochemical enrichments (1 x 0.5 cm), and 5) abiotic control.
- Batch file (MOTHUR) for extracting bacterial sequences
- Batch file (MOTHUR) for extracting archaeal sequences
- Taxonomy file from MOTHUR
- Shared file from MOTHUR
- Metadata file for downnstream analysis
- Folder with figure2 data and R script
- Folder with figure3 data and R script
- Folder with figure6 data and R script
- Folder with figure7 data and R script
Paper is found here [https://www.frontiersin.org/articles/10.3389/fenrg.2019.00121/full].