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Web: TS: Rename variable
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Fix variable name

Rename

proteinExpmntPage_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId
:

To

peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId
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@danjasuw
danjasuw committed Mar 30, 2024
1 parent b9582cd commit 0e8a95a
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Showing 2 changed files with 12 additions and 12 deletions.
22 changes: 11 additions & 11 deletions ...ngle_search/js/reportedPeptidesForSingleSearch_create_createReportedPeptideDisplayData.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -221,10 +221,10 @@ export const createReportedPeptideDisplayData = async function(
} else {
for ( const reportedPeptideId of reportedPeptideIds_ForDisplay ) {

const proteinExpmntPage_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId =
const peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId =
reportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId.get_EntryFor_reportedPeptideId(reportedPeptideId);

if ( proteinExpmntPage_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId.psmIds_Include ) {
if ( peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId.psmIds_Include ) {

filteringOn_PsmIds = true;
break;
Expand All @@ -236,12 +236,12 @@ export const createReportedPeptideDisplayData = async function(

for ( const reportedPeptideId of reportedPeptideIds_ToProcess ) {

let proteinExpmntPage_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId: Peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId = undefined
let peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId: Peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId = undefined

proteinExpmntPage_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId =
peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId =
reportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId.get_EntryFor_reportedPeptideId( reportedPeptideId );
if ( ! proteinExpmntPage_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId ) {
throw Error("_createReportedPeptideDisplayData: No proteinExpmntPage_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId for reportedPeptideId: " + reportedPeptideId + ", proteinSequenceVersionId: " + proteinSequenceVersionId + ", projectSearchId: " + projectSearchId );
if ( ! peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId ) {
throw Error("_createReportedPeptideDisplayData: No peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId for reportedPeptideId: " + reportedPeptideId + ", proteinSequenceVersionId: " + proteinSequenceVersionId + ", projectSearchId: " + projectSearchId );
}

if ( dataPerReportedPeptideId_Map_Key_reportedPeptideId ) {
Expand All @@ -256,10 +256,10 @@ export const createReportedPeptideDisplayData = async function(
psmIds_Include = dataPerReportedPeptideId.psmIdsSet;
psmCount_after_Include = dataPerReportedPeptideId.psmIdsSet.size;
} else {
psmIds_Include = new Set( proteinExpmntPage_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId.psmIds_Include );
psmCount_after_Include = proteinExpmntPage_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId.psmCount_after_Include;
psmIds_Include = new Set( peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId.psmIds_Include );
psmCount_after_Include = peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId.psmCount_after_Include;
}
proteinExpmntPage_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId = new Peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId({
peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId = new Peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId({
reportedPeptideId, psmIds_Include, psmCount_after_Include
});
}
Expand All @@ -278,7 +278,7 @@ export const createReportedPeptideDisplayData = async function(
}

const peptideItem : CreateReportedPeptideDisplayData_PeptideItem = {
reportedPeptideId, peptideUnique, peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId: proteinExpmntPage_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId,
reportedPeptideId, peptideUnique, peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId: peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId,
protein_Pre_Residues : new Set(),
protein_Pre_Residue_N_Term : false,
protein_Post_Residues : new Set(),
Expand All @@ -291,7 +291,7 @@ export const createReportedPeptideDisplayData = async function(
}
peptideItem.reportedPeptideSequence = reportedPeptideString;

peptideItem.numPsms = proteinExpmntPage_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId.psmCount_after_Include;
peptideItem.numPsms = peptide__single_protein_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId.psmCount_after_Include;

if ( show_Protein_Pre_Post_Residues ) {

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2 changes: 1 addition & 1 deletion ...inViewPage_DisplayData_ProteinList__CreateProteinDisplayData__Create_GeneratedPeptides.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -491,7 +491,7 @@ const internal_TopLevel_Function_AfterDataLoad = function (

// reportedPeptideIds filtered if applicable so now create display peptide row objects

for ( const reportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId // : ProteinExpmntPage_ReportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId
for ( const reportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId
of reportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId.get_Entries_IterableIterator() ) {

const reportedPeptideId = reportedPeptideIds_AndTheir_PSM_IDs__SingleProjectSearchId__ForSingleReportedPeptideId.reportedPeptideId
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