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Allow other extensions than nii.gz to be given by the user for optional input files #745

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merged 1 commit into from
Oct 2, 2021
Merged

Allow other extensions than nii.gz to be given by the user for optional input files #745

merged 1 commit into from
Oct 2, 2021

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36000
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@36000 36000 commented Oct 1, 2021 •
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@arokem
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arokem commented Oct 1, 2021

What is the use-case for this?

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36000 commented Oct 2, 2021

Iliana & Sendy are working on a dataset where there are image files in "mgz" format. They want to do something like:

brain_mask = LabelledMaskFile(
    "seg",
    {"scope": "freesurfer", "extension": "mgz"},
    exclusive_labels=[0])

@arokem arokem merged commit 49baa5a into yeatmanlab:master Oct 2, 2021
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@36000 @arokem