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Version 1.2

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@36000 36000 released this 05 Jan 00:05
· 180 commits to master since this release

Incorporates TRX, a new tractography file format, makes
a new way for organizing bundle dictionaries, extensive
documentation improvements, and many other minor fixes

  • DOC: Small fixes to the visualization example. (#1083)
  • [WIP/ENH] add AR from endpoint ROIs (#1078)
  • Update grant funding (#1076)
  • [FIX] Add exclusion ROI to IFOF (#1074)
  • Update fury (#1080)
  • [ENH] add some utilities for working with altair and pyafq (#1049)
  • [FIX] possible fix to pediatric bundle dict; some convenience updates in babyafq example (#1071)
  • (#1067)
  • fixed bundle prob map order (#1070)
  • ENH allow removal of profiles.csv; allow setting n_nodes in profile; make callosal bundles the default (#1052)
  • DOC: Extensive documentation improvements (#1051)
  • DOC: finish tractometry figure (#1055)
  • [doc] make afq tractometry pipeline page, reorganize usage section (#1053)
  • [FIX] bf for roi clipping (#1048)
  • [ENH] add line width argument to fury (#1046)
  • RF: Update call to seaborn plotting. (#1042)
  • [ENH,FIX] Integrate more steps into the segmentation pipeline (#1041)
  • [ENH] more specific bids entities and fixes to be bids compatible (#1035)
  • Removes some of the sphinx gallery ignore patterns. (#1017)
  • [enh] set afq home (#1037)
  • [FIX] pin astroid (#1038)
  • [ENH] Proposal for better bd management (#1014)
  • [FIX] download LV1 roi in this example (#1031)
  • [FIX] set default back to serial (#1030)
  • Adds an option to build the docs without running the examples. (#1025)
  • Fence the TRX test by checking whether TRX is installed. (#1020)
  • Remove unused MPL import (#1029)
  • Update installation_guide.rst (#1026)
  • (#1022)
  • add "GeneratedBy"s in dataset_description.json for BIDS 1.4+ compliance (#1019)
  • Incorporate TRX (#1006)