Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex (Wei et al, 2021)

Code base for mouse V1 Neurpixels EAP data analysis

• Method is presented in Wei et al. (2021):

Dependencies

• Python 3.6+
• AllenSDK
• pandas
• Seaborn
• Matplotlib
• scikit-learn
• SciPy
• Random
• scikit_posthocs

Mouse Neuropixels Visual Coding Data can be downloaded through the AllenSDK (Python 3.6+):

https://allensdk.readthedocs.io/en/latest/_static/examples/nb/ecephys_data_access.html

EAP feature analysis and unit clustering:

NP_EAP_FeatureAnalysis.ipynb

This code reproduces figures for Fig.2d.

Experiment-based Classifier and Model-based Classifier:

Exp_Model_Classifier.ipynb

This code reproduces figures for Fig.3c,f,g,h.