Dockerfile for Rstudio in Computational Clinical Psychology Lab

This is a repository of Dockerfile for Rstudio used in Computational Clinical Psychology Lab. This Dockerfile is based on ykunisato/paper-r. This Dockerfile add cognitive modeling packages, psychological networks modeling packages, and network meta-analysis packages to ykunisato/paper-r. Maintainer is Yoshihiko Kunisato (ykunisato@psy.senshu-u.ac.jp)

Usage

1. Install "Docker Desktop"

2. Open "terminal"(Mac) or Command Prompt(Win, I don't know Win. Sorry!)

3. Type the following code to pull a Docker container. Change the "password" and "name_of_container" as you like.

docker run -e PASSWORD=password -p 8787:8787 -v $PWD:/home/rstudio -d --name name_of_container ykunisato/ccp-lab-r

4. Open the web browser and type "http://localhost:8787/" in the URL bar.

5. You will see the Rstudio on the web browser. Type rstudio in ID column and password that you set in password column.

This Dockerfile add following R packages.

cognitive modeling packages

• ggdmc
• rjags
• Rsolnp
• ReinforcementLearning
• MDPtoolbox
• rtdists
• DstarM
• hBayesDM
• truncdist
• statmod
• pracma
• snowfall
• rlecuyer
• vioplot

psychological networks modeling packages

• qgraph
• IsingFit
• IsingSampler
• mlVAR
• graphicalVAR
• bootnet
• mgm
• pcalg
• NetworkComparisonTest
• networktree
• networktools
• gimme
• NetworkToolbox
• GGMnonreg
• BGGM
• bnlearn
• igraph
• semPlot
• EGAnet

I will add following R packages in future

• psychonetrics
• lvnet

network meta-analysis packages

• gemtc
• netmeta
• ggnetwork

EEG analysis packages

• eegUtils