deleted some entries that conflict with the linter

ylab-hi · Jul 3, 2023 · 4c095d6 · 4c095d6
1 parent e63a28f
commit 4c095d6
Showing 1 changed file with 0 additions and 13 deletions.
diff --git a/workflow/rules/ref.smk b/workflow/rules/ref.smk
@@ -17,19 +17,6 @@ rule get_genome:
         curl -L -o - https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_full_analysis_set.refseq_annotation.gtf.gz | gzip -d - > {output.annotation}       
         """
 
-rule mod_header:
-    input:
-        "resources/refs/genome.fasta"
-    output:
-        "resources/refs/genome_modheader.fasta"
-    conda:
-        "../envs/basic.yml"
-    log:
-        "logs/ref_modheader.log"
-    shell:
-        "python ./workflow/scripts/modify_fasta_header.py {input} {output} > {log}"
-
-
 rule genome_index: 
     input:
         "resources/refs/genome.fasta"